8Y81

Structure of the ige-fc bound to its high affinity receptor fc(epsilon)ri


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural insights into the high-affinity IgE receptor Fc epsilon RI complex.

Deng, M.Du, S.Hou, H.Xiao, J.

(2024) Nature 633: 952-959

  • DOI: https://doi.org/10.1038/s41586-024-07864-5
  • Primary Citation of Related Structures:  
    8Y81, 8Y84, 8Z0T, 8ZGS, 8ZGT

  • PubMed Abstract: 

    Immunoglobulin E (IgE) plays a pivotal role in allergic responses 1,2 . The high-affinity IgE receptor, FcεRI, found on mast cells and basophils, is central to the effector functions of IgE. FcεRI is a tetrameric complex, comprising FcεRIα, FcεRIβ and a homodimer of FcRγ (originally known as FcεRIγ), with FcεRIα recognizing the Fc region of IgE (Fcε) and FcεRIβ-FcRγ facilitating signal transduction 3 . Additionally, FcRγ is a crucial component of other immunoglobulin receptors, including those for IgG (FcγRI and FcγRIIIA) and IgA (FcαRI) 4-8 . However, the molecular basis of FcεRI assembly and the structure of FcRγ have remained elusive. Here we elucidate the cryogenic electron microscopy structure of the Fcε-FcεRI complex. FcεRIα has an essential role in the receptor's assembly, interacting with FcεRIβ and both FcRγ subunits. FcεRIβ is structured as a compact four-helix bundle, similar to the B cell antigen CD20. The FcRγ dimer exhibits an asymmetric architecture, and coils with the transmembrane region of FcεRIα to form a three-helix bundle. A cholesterol-like molecule enhances the interaction between FcεRIβ and the FcεRIα-FcRγ complex. Our mutagenesis analyses further indicate similarities between the interaction of FcRγ with FcεRIα and FcγRIIIA, but differences in that with FcαRI. These findings deepen our understanding of the signalling mechanisms of FcεRI and offer insights into the functionality of other immune receptors dependent on FcRγ.


  • Organizational Affiliation

    State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, People's Republic of China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
High affinity immunoglobulin epsilon receptor subunit alpha245Rattus norvegicusMutation(s): 0 
Gene Names: Fcer1aFce1a
Membrane Entity: Yes 
UniProt
Find proteins for P12371 (Rattus norvegicus)
Explore P12371 
Go to UniProtKB:  P12371
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12371
Glycosylation
Glycosylation Sites: 3Go to GlyGen: P12371-1
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
High affinity immunoglobulin epsilon receptor subunit beta243Rattus norvegicusMutation(s): 0 
Gene Names: Fce1bFcer1b
Membrane Entity: Yes 
UniProt
Find proteins for P13386 (Rattus norvegicus)
Explore P13386 
Go to UniProtKB:  P13386
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13386
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
High affinity immunoglobulin epsilon receptor subunit gammaC,
F [auth G]
119Rattus norvegicusMutation(s): 0 
Gene Names: Fcer1gFce1g
Membrane Entity: Yes 
UniProt
Find proteins for P20411 (Rattus norvegicus)
Explore P20411 
Go to UniProtKB:  P20411
Entity Groups  
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UniProt GroupP20411
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin heavy constant epsilonD [auth E],
E [auth F]
363Rattus norvegicusMutation(s): 0 
Gene Names: IGHE
Membrane Entity: Yes 
UniProt
Find proteins for P01855 (Rattus norvegicus)
Explore P01855 
Go to UniProtKB:  P01855
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01855
Glycosylation
Glycosylation Sites: 2Go to GlyGen: P01855-1
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseG [auth D],
H
3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G15407YE
GlyCosmos:  G15407YE
GlyGen:  G15407YE
Entity ID: 6
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseI [auth T]2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references
  • Version 1.2: 2024-10-09
    Changes: Data collection, Database references, Structure summary
  • Version 1.3: 2024-11-06
    Changes: Data collection