Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
Chang, C., Gao, Y.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Intron-encoded endonuclease I-PpoI | E [auth A], F [auth B] | 162 | Physarum polycephalum | Mutation(s): 0  EC: 3.1 | ![]() |
UniProt | |||||
Find proteins for Q94702 (Physarum polycephalum) Explore Q94702  Go to UniProtKB:  Q94702 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q94702 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3') | A [auth C], C [auth D] | 13 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3') | B [auth c], D [auth d] | 8 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
|
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | G [auth C], J [auth D], O [auth A], P [auth A], S [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | K [auth A], L [auth A], Q [auth B], R [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | H [auth c], M [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA (Subject of Investigation/LOI) Query on NA | I [auth c], N [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 113.65 | α = 90 |
b = 113.65 | β = 90 |
c = 88.31 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XSCALE | data scaling |
XDS | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Cancer Prevention and Research Institute of Texas (CPRIT) | United States | RR190046 |
Welch Foundation | United States | C-2033-20200401 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | T32 GM008280 |