8UH8

Crystal structure of SARS-CoV-2 main protease E166V (Apo structure)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.213 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

TKB272, an Orally Available SARS-CoV-2-Mpro Inhibitor Containing 5-Fluorobenzothiazole, Potently Blocks SARS-CoV-2 Replication without Ritonavir

Higashi-Kuwata, N.Bulut, H.Hayashi, H.Tsuji, K.Ogata-Aoki, H.Kiso, M.Takamune, N.Kishimoto, N.Hattori, S.Ishii, T.Kobayakawa, T.Nakano, K.Das, D.Saruwatari, J.Hasegawa, K.Murayama, K.Sukenaga, Y.Takamatsu, Y.Yoshimura, K.Aoki, M.Okamura, T.Yamayoshi, S.Kawaoka, Y.Misumi, S.Tamamura, H.Mitsuya, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ORF1a polyprotein302Severe acute respiratory syndrome coronavirus 2Mutation(s): 1 
Gene Names: ORF1ab
UniProt
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTD1 
Go to UniProtKB:  P0DTD1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DTD1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.213 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.069α = 90
b = 53.764β = 100.91
c = 44.642γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
MOLREPphasing
DIALSdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-24
    Type: Initial release