8RYT

Structural characterization of Thogoto Virus nucleoprotein provides insights into RNA encapsidation and assembly


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 18.0 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

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Literature

Structural characterization of Thogoto Virus nucleoprotein provides insights into viral RNA encapsidation and RNP assembly.

Dick, A.Mikirtumov, V.Fuchs, J.Krupp, F.Olal, D.Bendl, E.Sprink, T.Diebolder, C.Kudryashev, M.Kochs, G.Roske, Y.Daumke, O.

(2024) Structure 

  • DOI: https://doi.org/10.1016/j.str.2024.04.016
  • Primary Citation of Related Structures:  
    8CJW, 8RYT

  • PubMed Abstract: 

    Orthomyxoviruses, such as influenza and thogotoviruses, are important human and animal pathogens. Their segmented viral RNA genomes are wrapped by viral nucleoproteins (NPs) into helical ribonucleoprotein complexes (RNPs). NP structures of several influenza viruses have been reported. However, there are still contradictory models of how orthomyxovirus RNPs are assembled. Here, we characterize the crystal structure of Thogoto virus (THOV) NP and found striking similarities to structures of influenza viral NPs, including a two-lobed domain architecture, a positively charged RNA-binding cleft, and a tail loop important for trimerization and viral transcription. A low-resolution cryo-electron tomography reconstruction of THOV RNPs elucidates a left-handed double helical assembly. By providing a model for RNP assembly of THOV, our study suggests conserved NP assembly and RNA encapsidation modes for thogoto- and influenza viruses.


  • Organizational Affiliation

    From Structural Biology, Max-Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert-Rössle-Straße 10, 13125 Berlin, Germany; Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraße 6, 14195 Berlin, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoprotein445ThogotovirusMutation(s): 0 
Gene Names: Segment 5
UniProt
Find proteins for P89216 (Thogoto virus (isolate SiAr 126))
Explore P89216 
Go to UniProtKB:  P89216
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP89216
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 18.0 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyDA 1127/1-2 and SFB958/A12

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release