8RMS

Influenza polymerase A/H7N9-4M replicase minus 627(R) (from "Influenza polymerase A/H7N9-4M replication complex" | Local refinement)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.21 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structures of influenza A and B replication complexes give insight into avian to human host adaptation and reveal a role of ANP32 as an electrostatic chaperone for the apo-polymerase.

Arragain, B.Krischuns, T.Pelosse, M.Drncova, P.Blackledge, M.Naffakh, N.Cusack, S.

(2024) Nat Commun 15: 6910-6910

  • DOI: https://doi.org/10.1038/s41467-024-51007-3
  • Primary Citation of Related Structures:  
    8RMP, 8RMQ, 8RMR, 8RMS, 8RN0, 8RN1, 8RN2, 8RN3, 8RN4, 8RN5, 8RN6, 8RN7, 8RN8, 8RN9, 8RNA, 8RNB, 8RNC

  • PubMed Abstract: 

    Replication of influenza viral RNA depends on at least two viral polymerases, a parental replicase and an encapsidase, and cellular factor ANP32. ANP32 comprises an LRR domain and a long C-terminal low complexity acidic region (LCAR). Here we present evidence suggesting that ANP32 is recruited to the replication complex as an electrostatic chaperone that stabilises the encapsidase moiety within apo-polymerase symmetric dimers that are distinct for influenza A and B polymerases. The ANP32 bound encapsidase, then forms the asymmetric replication complex with the replicase, which is embedded in a parental ribonucleoprotein particle (RNP). Cryo-EM structures reveal the architecture of the influenza A and B replication complexes and the likely trajectory of the nascent RNA product into the encapsidase. The cryo-EM map of the FluB replication complex shows extra density attributable to the ANP32 LCAR wrapping around and stabilising the apo-encapsidase conformation. These structures give new insight into the various mutations that adapt avian strain polymerases to use the distinct ANP32 in mammalian cells.


  • Organizational Affiliation

    European Molecular Biology Laboratory, Grenoble, Cedex 9, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Polymerase acidic protein716Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Mutation(s): 2 
Gene Names: PA
EC: 3.1
UniProt
Find proteins for M9TI86 (Influenza A virus)
Explore M9TI86 
Go to UniProtKB:  M9TI86
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM9TI86
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymerase catalytic subunit757Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Mutation(s): 1 
Gene Names: PB1
EC: 2.7.7.48
UniProt
Find proteins for S5ME50 (Influenza A virus)
Explore S5ME50 
Go to UniProtKB:  S5ME50
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS5ME50
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Polymerase basic protein 2788Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Mutation(s): 1 
Gene Names: PB2
UniProt
Find proteins for X5F427 (Influenza A virus)
Explore X5F427 
Go to UniProtKB:  X5F427
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupX5F427
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.21 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-18-CE18-0028

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release