Download MendeleyStructural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Nurullina, L., Terrosu, S., Jenner, L., Myasnikov, A., Yusupov, M.To be published.
8Q87
Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
- PDB DOI: https://doi.org/10.2210/pdb8Q87/pdb
- EM Map EMD-18169: EMDB EMDataResource
- NAKB: 8Q87
- Classification: RIBOSOME
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2023-08-18 Released: 2024-08-28
- Funding Organization(s): Fondation pour la Recherche Medicale (FRM)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.40 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
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Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L41 | D [auth Az] | 25 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A087WNH4 (Oryctolagus cuniculus) Explore A0A087WNH4 Go to UniProtKB: A0A087WNH4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A087WNH4 | ||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L8 | E [auth BA] | 257 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NIX0 (Gallus gallus) Explore F1NIX0 Go to UniProtKB: F1NIX0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NIX0 | ||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL3 | F [auth BB] | 403 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZJZ2 (Gallus gallus) Explore Q5ZJZ2 Go to UniProtKB: Q5ZJZ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZJZ2 | ||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L4 C-terminal domain-containing protein | G [auth BC] | 421 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZII1 (Gallus gallus) Explore Q5ZII1 Go to UniProtKB: Q5ZII1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZII1 | ||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL18 | H [auth BD] | 297 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P22451 (Gallus gallus) Explore P22451 Go to UniProtKB: P22451 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22451 | ||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L6 | I [auth BE] | 298 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8UWG7 (Gallus gallus) Explore Q8UWG7 Go to UniProtKB: Q8UWG7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8UWG7 | ||||
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Entity ID: 10 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL30 | J [auth BF] | 246 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZJ56 (Gallus gallus) Explore Q5ZJ56 Go to UniProtKB: Q5ZJ56 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZJ56 | ||||
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Entity ID: 11 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL8 | K [auth BG] | 266 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P32429 (Gallus gallus) Explore P32429 Go to UniProtKB: P32429 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P32429 | ||||
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Entity ID: 12 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L9 | L [auth BH] | 192 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1D5NVI1 (Gallus gallus) Explore A0A1D5NVI1 Go to UniProtKB: A0A1D5NVI1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1D5NVI1 | ||||
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Entity ID: 13 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16 | M [auth BI] | 214 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q08200 (Gallus gallus) Explore Q08200 Go to UniProtKB: Q08200 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q08200 | ||||
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Entity ID: 14 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L11 | N [auth BJ] | 178 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1D5P3B1 (Gallus gallus) Explore A0A1D5P3B1 Go to UniProtKB: A0A1D5P3B1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1D5P3B1 | ||||
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Entity ID: 15 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL13 | O [auth BL] | 211 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P41125 (Gallus gallus) Explore P41125 Go to UniProtKB: P41125 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P41125 | ||||
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Entity ID: 16 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L14 | P [auth BM] | 131 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF9 (Gallus gallus) Explore Q98TF9 Go to UniProtKB: Q98TF9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF9 | ||||
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Entity ID: 17 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L15 | Q [auth BN] | 204 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NQG5 (Gallus gallus) Explore F1NQG5 Go to UniProtKB: F1NQG5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NQG5 | ||||
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Entity ID: 18 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL13 | R [auth BO] | 203 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 19 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L17 | S [auth BP] | 184 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1D5PR40 (Gallus gallus) Explore A0A1D5PR40 Go to UniProtKB: A0A1D5PR40 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1D5PR40 | ||||
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Entity ID: 20 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eL18 | T [auth BQ] | 187 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 21 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L19 | U [auth BR] | 196 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZKK8 (Gallus gallus) Explore Q5ZKK8 Go to UniProtKB: Q5ZKK8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZKK8 | ||||
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Entity ID: 22 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eL20 | V [auth BS] | 176 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 23 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L21 | W [auth BT] | 160 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for R4GIQ2 (Gallus gallus) Explore R4GIQ2 Go to UniProtKB: R4GIQ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | R4GIQ2 | ||||
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Entity ID: 24 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL22 | X [auth BU] | 128 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF8 (Gallus gallus) Explore Q98TF8 Go to UniProtKB: Q98TF8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF8 | ||||
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Entity ID: 25 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protei uL14 | Y [auth BV] | 140 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 26 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L24 | Z [auth BW] | 157 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0XRE7 (Gallus gallus) Explore A0A8V0XRE7 Go to UniProtKB: A0A8V0XRE7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8V0XRE7 | ||||
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Entity ID: 27 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL23 | AA [auth BX] | 155 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 28 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L26 like 1 | BA [auth BY] | 145 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F2Z4K6 (Gallus gallus) Explore F2Z4K6 Go to UniProtKB: F2Z4K6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F2Z4K6 | ||||
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Entity ID: 29 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL27 | CA [auth BZ] | 136 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P61355 (Gallus gallus) Explore P61355 Go to UniProtKB: P61355 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61355 | ||||
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Entity ID: 30 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL15 | DA [auth Ba] | 148 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 31 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L29 | EA [auth Bb] | 71 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1L1RNZ2 (Gallus gallus) Explore A0A1L1RNZ2 Go to UniProtKB: A0A1L1RNZ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1L1RNZ2 | ||||
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Entity ID: 32 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL30 | FA [auth Bc] | 115 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P67883 (Gallus gallus) Explore P67883 Go to UniProtKB: P67883 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P67883 | ||||
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Entity ID: 33 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L31 | GA [auth Bd] | 176 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1L1RT94 (Gallus gallus) Explore A0A1L1RT94 Go to UniProtKB: A0A1L1RT94 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1L1RT94 | ||||
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Entity ID: 34 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L32 | HA [auth Be] | 135 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1BVB1 (Gallus gallus) Explore E1BVB1 Go to UniProtKB: E1BVB1 | |||||
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| UniProt Group | E1BVB1 | ||||
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Entity ID: 35 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eL33 | IA [auth Bf] | 110 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 36 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L34 | JA [auth Bg] | 117 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1L1S0X5 (Gallus gallus) Explore A0A1L1S0X5 Go to UniProtKB: A0A1L1S0X5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1L1S0X5 | ||||
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Entity ID: 37 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL29 | KA [auth Bh] | 123 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF7 (Gallus gallus) Explore Q98TF7 Go to UniProtKB: Q98TF7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF7 | ||||
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Entity ID: 38 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL36 | LA [auth Bi] | 105 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF6 (Gallus gallus) Explore Q98TF6 Go to UniProtKB: Q98TF6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF6 | ||||
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Entity ID: 39 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L37 | MA [auth Bj] | 97 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1C810 (Gallus gallus) Explore E1C810 Go to UniProtKB: E1C810 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1C810 | ||||
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Entity ID: 40 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L38 | NA [auth Bk] | 70 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1BU66 (Gallus gallus) Explore E1BU66 Go to UniProtKB: E1BU66 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1BU66 | ||||
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Entity ID: 41 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL39 | OA [auth Bl] | 51 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF5 (Gallus gallus) Explore Q98TF5 Go to UniProtKB: Q98TF5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF5 | ||||
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Entity ID: 42 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin-60S ribosomal protein L40 | PA [auth Bm] | 128 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O42388 (Gallus gallus) Explore O42388 Go to UniProtKB: O42388 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O42388 | ||||
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Entity ID: 43 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L36a like | QA [auth Bo] | 105 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0YUB1 (Gallus gallus) Explore A0A8V0YUB1 Go to UniProtKB: A0A8V0YUB1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8V0YUB1 | ||||
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Entity ID: 44 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL43 | RA [auth Bp] | 92 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P32046 (Gallus gallus) Explore P32046 Go to UniProtKB: P32046 | |||||
Entity Groups | |||||
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| UniProt Group | P32046 | ||||
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Entity ID: 45 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L28 | SA [auth Br] | 138 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5F346 (Gallus gallus) Explore Q5F346 Go to UniProtKB: Q5F346 | |||||
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| UniProt Group | Q5F346 | ||||
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Entity ID: 47 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eS1 | UA [auth Aa] | 264 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 48 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S27 | VA [auth AA] | 84 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A3Q2TV39 (Gallus gallus) Explore A0A3Q2TV39 Go to UniProtKB: A0A3Q2TV39 | |||||
Entity Groups | |||||
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| UniProt Group | A0A3Q2TV39 | ||||
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Entity ID: 49 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S28 | WA [auth AB] | 69 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A3Q2U825 (Gallus gallus) Explore A0A3Q2U825 Go to UniProtKB: A0A3Q2U825 | |||||
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| UniProt Group | A0A3Q2U825 | ||||
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Entity ID: 50 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S2 | XA [auth Ab] | 264 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0Z891 (Gallus gallus) Explore A0A8V0Z891 Go to UniProtKB: A0A8V0Z891 | |||||
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| UniProt Group | A0A8V0Z891 | ||||
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Entity ID: 51 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin | YA [auth AC] | 156 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P79781 (Gallus gallus) Explore P79781 Go to UniProtKB: P79781 | |||||
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| UniProt Group | P79781 | ||||
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Entity ID: 52 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-(apurinic or apyrimidinic site) lyase | ZA [auth Ac] | 243 | Gallus gallus | Mutation(s): 0 EC: 4.2.99.18 |  |
UniProt | |||||
Find proteins for F1NPA9 (Gallus gallus) Explore F1NPA9 Go to UniProtKB: F1NPA9 | |||||
Entity Groups | |||||
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| UniProt Group | F1NPA9 | ||||
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Entity ID: 53 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS4 | AB [auth Ad] | 263 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P47836 (Gallus gallus) Explore P47836 Go to UniProtKB: P47836 | |||||
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| UniProt Group | P47836 | ||||
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Entity ID: 54 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eS30 | BB [auth AD] | 133 | Gallus gallus | Mutation(s): 0 |  |
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Entity ID: 55 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S26 | CB [auth AE] | 115 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZM66 (Gallus gallus) Explore Q5ZM66 Go to UniProtKB: Q5ZM66 | |||||
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| UniProt Group | Q5ZM66 | ||||
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Entity ID: 56 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S5 | DB [auth Ae] | 204 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for G1TFM5 (Oryctolagus cuniculus) Explore G1TFM5 Go to UniProtKB: G1TFM5 | |||||
Entity Groups | |||||
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| UniProt Group | G1TFM5 | ||||
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Entity ID: 57 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS6 | EB [auth Af] | 249 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P47838 (Gallus gallus) Explore P47838 Go to UniProtKB: P47838 | |||||
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| UniProt Group | P47838 | ||||
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Entity ID: 58 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein RACK1 | FB [auth AF] | 317 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P63247 (Gallus gallus) Explore P63247 Go to UniProtKB: P63247 | |||||
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| UniProt Group | P63247 | ||||
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Entity ID: 59 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S7 | GB [auth Ag] | 194 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NN16 (Gallus gallus) Explore F1NN16 Go to UniProtKB: F1NN16 | |||||
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| UniProt Group | F1NN16 | ||||
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Entity ID: 60 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S29 | HB [auth AG] | 171 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0Z8V3 (Gallus gallus) Explore A0A8V0Z8V3 Go to UniProtKB: A0A8V0Z8V3 | |||||
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| UniProt Group | A0A8V0Z8V3 | ||||
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Entity ID: 61 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S8 | IB [auth Ah] | 207 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NB02 (Gallus gallus) Explore F1NB02 Go to UniProtKB: F1NB02 | |||||
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| UniProt Group | F1NB02 | ||||
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Entity ID: 62 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S9 | JB [auth Ai] | 194 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for B7NZS8 (Oryctolagus cuniculus) Explore B7NZS8 Go to UniProtKB: B7NZS8 | |||||
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| UniProt Group | B7NZS8 | ||||
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Entity ID: 63 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S10 | KB [auth Aj] | 165 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1C4N0 (Gallus gallus) Explore E1C4N0 Go to UniProtKB: E1C4N0 | |||||
Entity Groups | |||||
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| UniProt Group | E1C4N0 | ||||
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Entity ID: 64 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S11 | LB [auth Ak] | 158 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TH5 (Gallus gallus) Explore Q98TH5 Go to UniProtKB: Q98TH5 | |||||
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| UniProt Group | Q98TH5 | ||||
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Entity ID: 65 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS12 | MB [auth Al] | 132 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P84175 (Gallus gallus) Explore P84175 Go to UniProtKB: P84175 | |||||
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| UniProt Group | P84175 | ||||
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Entity ID: 66 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS15 | NB [auth Am] | 151 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q6ITC7 (Gallus gallus) Explore Q6ITC7 Go to UniProtKB: Q6ITC7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6ITC7 | ||||
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Entity ID: 67 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S14 | OB [auth An] | 151 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZHW8 (Gallus gallus) Explore Q5ZHW8 Go to UniProtKB: Q5ZHW8 | |||||
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| UniProt Group | Q5ZHW8 | ||||
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Entity ID: 68 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS19 | PB [auth Ao] | 145 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P62846 (Gallus gallus) Explore P62846 Go to UniProtKB: P62846 | |||||
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| UniProt Group | P62846 | ||||
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Entity ID: 69 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS17 | QB [auth Aq] | 135 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P08636 (Gallus gallus) Explore P08636 Go to UniProtKB: P08636 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08636 | ||||
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Entity ID: 70 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S18 | RB [auth Ar] | 152 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for G1TPG3 (Oryctolagus cuniculus) Explore G1TPG3 Go to UniProtKB: G1TPG3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G1TPG3 | ||||
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Entity ID: 71 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eS19 | SB [auth As] | 145 | Gallus gallus | Mutation(s): 0 |  |
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Entity ID: 72 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S20 | TB [auth At] | 119 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NH93 (Gallus gallus) Explore F1NH93 Go to UniProtKB: F1NH93 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NH93 | ||||
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Entity ID: 73 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eS21 | UB [auth Au] | 83 | Gallus gallus | Mutation(s): 0 |  |
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Entity ID: 74 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S15a | VB [auth Av] | 130 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A3Q3A7P6 (Gallus gallus) Explore A0A3Q3A7P6 Go to UniProtKB: A0A3Q3A7P6 | |||||
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| UniProt Group | A0A3Q3A7P6 | ||||
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Entity ID: 75 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uS12 | WB [auth Aw] | 143 | Gallus gallus | Mutation(s): 0 |  |
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Entity ID: 76 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S24 | XB [auth Ax] | 131 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NF89 (Gallus gallus) Explore F1NF89 Go to UniProtKB: F1NF89 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NF89 | ||||
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Entity ID: 77 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S25 | YB [auth Ay] | 125 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V1A7V4 (Gallus gallus) Explore A0A8V1A7V4 Go to UniProtKB: A0A8V1A7V4 | |||||
Entity Groups | |||||
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| UniProt Group | A0A8V1A7V4 | ||||
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Entity ID: 78 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS2 | ZB [auth AZ] | 296 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P50890 (Gallus gallus) Explore P50890 Go to UniProtKB: P50890 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P50890 | ||||
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Entity ID: 79 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S16 | AC [auth Ap] | 146 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for R4GGJ0 (Gallus gallus) Explore R4GGJ0 Go to UniProtKB: R4GGJ0 | |||||
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| UniProt Group | R4GGJ0 | ||||
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Entity ID: 81 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SERPINE1 mRNA binding protein 1 | CC [auth S] | 404 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0ZUK5 (Gallus gallus) Explore A0A8V0ZUK5 Go to UniProtKB: A0A8V0ZUK5 | |||||
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| UniProt Group | A0A8V0ZUK5 | ||||
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Entity ID: 82 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Elongation factor 2 | DC [auth A] | 858 | Gallus gallus | Mutation(s): 0 EC: 3.6.5 |  |
UniProt | |||||
Find proteins for Q90705 (Gallus gallus) Explore Q90705 Go to UniProtKB: Q90705 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q90705 | ||||
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Entity ID: 83 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL10 | EC [auth Bs] | 316 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P47826 (Gallus gallus) Explore P47826 Go to UniProtKB: P47826 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P47826 | ||||
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Entity ID: 84 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L12 | FC [auth Bt] | 165 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1BTG1 (Gallus gallus) Explore E1BTG1 Go to UniProtKB: E1BTG1 | |||||
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| UniProt Group | E1BTG1 | ||||
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Entity ID: 85 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein | GC [auth Bv] | 217 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F6SU35 (Gallus gallus) Explore F6SU35 Go to UniProtKB: F6SU35 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F6SU35 | ||||
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Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 28S rRNA | A [auth B5] | 4,441 | Gallus gallus |  | |
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5.8S rRNA | B [auth B8] | 157 | Gallus gallus |  | |
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5S rRNA | C [auth B7] | 119 | Gallus gallus |  | |
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Entity ID: 46 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 18S rRNA | TA [auth A2] | 1,823 | Gallus gallus |  | |
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Entity ID: 80 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Phe tRNA | BC [auth V] | 76 | Gallus gallus |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | MV [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| ZN Query on ZN | EV [auth AC] FV [auth AE] HV [auth AG] MQ [auth Bg] NQ [auth Bj] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MG Query on MG | AD [auth B5] AE [auth B5] AF [auth B5] AG [auth B5] AH [auth B5] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| HIC Query on HIC | F [auth BB] | L-PEPTIDE LINKING | C7 H11 N3 O2 |  | HIS |
| MLZ Query on MLZ | QA [auth Bo] | L-PEPTIDE LINKING | C7 H16 N2 O2 |  | LYS |
| NMM Query on NMM | SB [auth As] | L-PEPTIDE LINKING | C7 H16 N4 O2 |  | ARG |
| SAC Query on SAC | ZB [auth AZ] | L-PEPTIDE LINKING | C5 H9 N O4 |  | SER |
| DDE Query on DDE | DC [auth A] | L-PEPTIDE LINKING | C13 H24 N5 O3 |  | HIS |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.40 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.19rc4_4035: |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Nurullina, L., Jenner, L., Yusupov, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Fondation pour la Recherche Medicale (FRM) | France | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release
