8Q87

Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DB [auth Ae]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
RB [auth Ar]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth BA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
E [auth BA]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
F [auth BB]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
G [auth BC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
G [auth BC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth BD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
H [auth BD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
H [auth BD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
I [auth BE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
I [auth BE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
J [auth BF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
L [auth BH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth BH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
M [auth BI]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth BI]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
N [auth BJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
N [auth BJ]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
N [auth BJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
O [auth BL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
O [auth BL]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
P [auth BM]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
P [auth BM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Q [auth BN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
R [auth BO]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
U [auth BR]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
U [auth BR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
V [auth BS]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
W [auth BT]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
W [auth BT]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
Y [auth BV]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
Z [auth BW]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
BA [auth BY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
BA [auth BY]PF00467KOW motif (KOW)KOW motif- Family
CA [auth BZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
CA [auth BZ]PF00467KOW motif (KOW)KOW motif- Family
VA [auth AA]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
WA [auth AB]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
YA [auth AC]PF07650KH domain (KH_2)KH domain- Domain
YA [auth AC]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
YA [auth AC]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
BB [auth AD]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
BB [auth AD]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
CB [auth AE]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
FB [auth AF]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
FB [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HB [auth AG]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
HB [auth AG]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
ZB [auth AZ]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
ZB [auth AZ]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
ZB [auth AZ]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
CC [auth S]PF04774Hyaluronan / mRNA binding family (HABP4_PAI-RBP1)Hyaluronan / mRNA binding family- Family
DC [auth A]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
DC [auth A]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
DC [auth A]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
DC [auth A]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
DC [auth A]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
S [auth BP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
S [auth BP]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B5]28S rRNA---
B [auth B8]5.8S rRNA---
C [auth B7]5S rRNA---
D [auth Az]60S ribosomal protein L41
E [auth BA]60S ribosomal protein L8
F [auth BB]Ribosomal protein uL3
G [auth BC]60S ribosomal protein L4 C-terminal domain-containing protein
H [auth BD]Large ribosomal subunit protein uL18
I [auth BE]60S ribosomal protein L6
J [auth BF]Large ribosomal subunit protein uL30
K [auth BG]Large ribosomal subunit protein eL8
L [auth BH]60S ribosomal protein L9
M [auth BI]Ribosomal protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16
N [auth BJ]60S ribosomal protein L11
O [auth BL]Large ribosomal subunit protein eL13
P [auth BM]60S ribosomal protein L14
Q [auth BN]Ribosomal protein L15
R [auth BO]Ribosomal protein uL13---
T [auth BQ]Ribosomal protein eL18---
U [auth BR]Ribosomal protein L19
V [auth BS]Ribosomal protein eL20---
W [auth BT]60S ribosomal protein L21
X [auth BU]Large ribosomal subunit protein eL22
Y [auth BV]Ribosomal protei uL14---
Z [auth BW]Ribosomal protein L24- - -
AA [auth BX]Ribosomal protein uL23---
BA [auth BY]Ribosomal protein L26 like 1
CA [auth BZ]Large ribosomal subunit protein eL27
DA [auth Ba]Ribosomal protein uL15---
EA [auth Bb]60S ribosomal protein L29
FA [auth Bc]Large ribosomal subunit protein eL30 -
GA [auth Bd]60S ribosomal protein L31
HA [auth Be]Ribosomal protein L32
IA [auth Bf]Ribosomal protein eL33---
JA [auth Bg]60S ribosomal protein L34
KA [auth Bh]Large ribosomal subunit protein uL29
LA [auth Bi]Large ribosomal subunit protein eL36
MA [auth Bj]Ribosomal protein L37
NA [auth Bk]60S ribosomal protein L38
OA [auth Bl]Large ribosomal subunit protein eL39
PA [auth Bm]Ubiquitin-60S ribosomal protein L40
QA [auth Bo]Ribosomal protein L36a like
RA [auth Bp]Large ribosomal subunit protein eL43
SA [auth Br]60S ribosomal protein L28
TA [auth A2]18S rRNA---
UA [auth Aa]Ribosomal protein eS1---
VA [auth AA]40S ribosomal protein S27
WA [auth AB]40S ribosomal protein S28
XA [auth Ab]40S ribosomal protein S2
YA [auth AC]Ubiquitin
ZA [auth Ac]DNA-(apurinic or apyrimidinic site) lyase
AB [auth Ad]Small ribosomal subunit protein eS4
BB [auth AD]Ribosomal protein eS30---
CB [auth AE]40S ribosomal protein S26
DB [auth Ae]Ribosomal protein S5
EB [auth Af]Small ribosomal subunit protein eS6
FB [auth AF]Small ribosomal subunit protein RACK1
GB [auth Ag]40S ribosomal protein S7
HB [auth AG]40S ribosomal protein S29
IB [auth Ah]40S ribosomal protein S8
JB [auth Ai]40S ribosomal protein S9
KB [auth Aj]Ribosomal protein S10 -
MB [auth Al]Small ribosomal subunit protein eS12
NB [auth Am]Small ribosomal subunit protein uS15
OB [auth An]Ribosomal protein S14
PB [auth Ao]Small ribosomal subunit protein uS19
QB [auth Aq]Small ribosomal subunit protein eS17
RB [auth Ar]40S ribosomal protein S18
SB [auth As]Ribosomal protein eS19---
TB [auth At]40S ribosomal protein S20
UB [auth Au]Ribosomal protein eS21---
VB [auth Av]40S ribosomal protein S15a
WB [auth Aw]Ribosomal protein uS12---
XB [auth Ax]40S ribosomal protein S24
YB [auth Ay]40S ribosomal protein S25 -
ZB [auth AZ]Small ribosomal subunit protein uS2
AC [auth Ap]Ribosomal protein S16
BC [auth V]Phe tRNA---
CC [auth S]SERPINE1 mRNA binding protein 1 - -
DC [auth A]Elongation factor 2
EC [auth Bs]Large ribosomal subunit protein uL10
FC [auth Bt]60S ribosomal protein L12
GC [auth Bv]Ribosomal protein
S [auth BP]60S ribosomal protein L17
LB [auth Ak]40S ribosomal protein S11

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth Az]IPR007836Large ribosomal subunit protein eS32Family
E [auth BA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth BA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth BA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth BA]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
E [auth BA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth BA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth BA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth BA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth BA]IPR002171Large ribosomal subunit protein uL2Family
F [auth BB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth BB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth BB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
F [auth BB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
F [auth BB]IPR000597Large ribosomal subunit protein uL3Family
G [auth BC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth BC]IPR002136Large ribosomal subunit protein uL4Family
G [auth BC]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
G [auth BC]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
G [auth BC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth BD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
H [auth BD]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
I [auth BE]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
I [auth BE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
I [auth BE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth BE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
I [auth BE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth BE]IPR000915Large ribosomal subunit protein eL6Family
J [auth BF]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
J [auth BF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
J [auth BF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth BF]IPR039699Large ribosomal subunit protein uL30Family
J [auth BF]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
J [auth BF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
J [auth BF]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
K [auth BG]IPR001921Large ribosomal subunit protein eL8Family
K [auth BG]IPR050257Eukaryotic ribosomal RNA-processing and assembly proteinFamily
K [auth BG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth BG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
K [auth BG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
K [auth BG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
L [auth BH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth BH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
L [auth BH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth BH]IPR000702Large ribosomal subunit protein uL6-likeFamily
M [auth BI]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth BI]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
M [auth BI]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth BI]IPR047873Large ribosomal subunit protein uL16Family
M [auth BI]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
N [auth BJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth BJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth BJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth BJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth BJ]IPR002132Large ribosomal subunit protein uL5Family
O [auth BL]IPR001380Large ribosomal subunit protein eL13Family
O [auth BL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
P [auth BM]IPR039660Large ribosomal subunit protein eL14Family
P [auth BM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
P [auth BM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth BM]IPR002784Large ribosomal subunit protein eL14 domainDomain
P [auth BM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth BN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth BN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Q [auth BN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Q [auth BN]IPR000439Large ribosomal subunit protein eL15Family
U [auth BR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth BR]IPR039547Large ribosomal subunit protein eL19Family
U [auth BR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth BR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth BR]IPR000196Large ribosomal subunit protein eL19 domainDomain
U [auth BR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
W [auth BT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth BT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth BT]IPR001147Large ribosomal subunit protein eL21Family
W [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth BU]IPR002671Large ribosomal subunit protein eL22Family
X [auth BU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Z [auth BW]IPR011017TRASH domainDomain
Z [auth BW]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Z [auth BW]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Z [auth BW]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
BA [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
BA [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth BY]IPR005824KOWDomain
BA [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth BY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
BA [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
CA [auth BZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
CA [auth BZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
CA [auth BZ]IPR005824KOWDomain
CA [auth BZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth BZ]IPR001141Large ribosomal subunit protein eL27Family
CA [auth BZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
EA [auth Bb]IPR002673Large ribosomal subunit protein eL29Family
FA [auth Bc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
FA [auth Bc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
FA [auth Bc]IPR000231Large ribosomal subunit protein eL30Family
FA [auth Bc]IPR039109Large ribosomal subunit protein eL30-likeFamily
FA [auth Bc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GA [auth Bd]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
GA [auth Bd]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
GA [auth Bd]IPR000054Large ribosomal subunit protein eL31Family
HA [auth Be]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
HA [auth Be]IPR001515Large ribosomal subunit protein eL32Family
HA [auth Be]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
JA [auth Bg]IPR008195Large ribosomal subunit protein eL34Family
JA [auth Bg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
KA [auth Bh]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
KA [auth Bh]IPR001854Large ribosomal subunit protein uL29Family
KA [auth Bh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
KA [auth Bh]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
LA [auth Bi]IPR000509Large ribosomal subunit protein eL36Family
LA [auth Bi]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
MA [auth Bj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MA [auth Bj]IPR001569Large ribosomal subunit protein eL37Family
MA [auth Bj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
MA [auth Bj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NA [auth Bk]IPR002675Large ribosomal subunit protein eL38Family
NA [auth Bk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
OA [auth Bl]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
OA [auth Bl]IPR000077Large ribosomal subunit protein eL39Family
OA [auth Bl]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
PA [auth Bm]IPR019954Ubiquitin conserved siteConserved Site
PA [auth Bm]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
PA [auth Bm]IPR000626Ubiquitin-like domainDomain
PA [auth Bm]IPR019956Ubiquitin domainDomain
PA [auth Bm]IPR050158Ubiquitin and ubiquitin-likeFamily
PA [auth Bm]IPR001975Large ribosomal subunit protein eL40 domainDomain
PA [auth Bm]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
QA [auth Bo]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
QA [auth Bo]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth Bo]IPR000552Large ribosomal subunit protein eL42Family
RA [auth Bp]IPR002674Large ribosomal subunit protein eL43Family
RA [auth Bp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth Bp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
SA [auth Br]IPR029004Ribosomal eL28/Mak16Domain
SA [auth Br]IPR002672Large ribosomal subunit protein eL28Family
VA [auth AA]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
VA [auth AA]IPR000592Small ribosomal subunit protein eS27Family
VA [auth AA]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth AB]IPR028626Ribosomal protein eS28 conserved siteConserved Site
WA [auth AB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WA [auth AB]IPR000289Small ribosomal subunit protein eS28Family
XA [auth Ab]IPR000851Small ribosomal subunit protein uS5Family
XA [auth Ab]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
XA [auth Ab]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
XA [auth Ab]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
XA [auth Ab]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
XA [auth Ab]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
XA [auth Ab]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
YA [auth AC]IPR019954Ubiquitin conserved siteConserved Site
YA [auth AC]IPR000626Ubiquitin-like domainDomain
YA [auth AC]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
YA [auth AC]IPR002906Small ribosomal subunit protein eS31Domain
YA [auth AC]IPR019956Ubiquitin domainDomain
YA [auth AC]IPR050158Ubiquitin and ubiquitin-likeFamily
YA [auth AC]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
YA [auth AC]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZA [auth Ac]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
ZA [auth Ac]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
ZA [auth Ac]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
ZA [auth Ac]IPR004044K Homology domain, type 2Domain
ZA [auth Ac]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
ZA [auth Ac]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
ZA [auth Ac]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
AB [auth Ad]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
AB [auth Ad]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
AB [auth Ad]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
AB [auth Ad]IPR002942RNA-binding S4 domainDomain
AB [auth Ad]IPR013845Small ribosomal subunit protein eS4, central regionDomain
AB [auth Ad]IPR000876Small ribosomal subunit protein eS4Family
AB [auth Ad]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AB [auth Ad]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
AB [auth Ad]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
AB [auth Ad]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AB [auth Ad]IPR005824KOWDomain
CB [auth AE]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
CB [auth AE]IPR000892Small ribosomal subunit protein eS26Family
CB [auth AE]IPR047864Ribosomal protein eS26, conserved siteConserved Site
DB [auth Ae]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
DB [auth Ae]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
DB [auth Ae]IPR000235Small ribosomal subunit protein uS7Family
DB [auth Ae]IPR023798Small ribosomal subunit protein uS7 domainDomain
DB [auth Ae]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
EB [auth Af]IPR014401Small ribosomal subunit protein eS6-likeFamily
EB [auth Af]IPR001377Small ribosomal subunit protein eS6Family
EB [auth Af]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
FB [auth AF]IPR019775WD40 repeat, conserved siteConserved Site
FB [auth AF]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FB [auth AF]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FB [auth AF]IPR045223Small ribosomal subunit protein RACK1-likeFamily
FB [auth AF]IPR001680WD40 repeatRepeat
FB [auth AF]IPR020472G-protein beta WD-40 repeatRepeat
GB [auth Ag]IPR000554Small ribosomal subunit protein eS7Family
GB [auth Ag]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
HB [auth AG]IPR001209Small ribosomal subunit protein uS14Family
HB [auth AG]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
HB [auth AG]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
HB [auth AG]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
IB [auth Ah]IPR001047Small ribosomal subunit protein eS8Family
IB [auth Ah]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
IB [auth Ah]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
IB [auth Ah]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
JB [auth Ai]IPR002942RNA-binding S4 domainDomain
JB [auth Ai]IPR022801Small ribosomal subunit protein uS4Family
JB [auth Ai]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
JB [auth Ai]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
JB [auth Ai]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
JB [auth Ai]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KB [auth Aj]IPR037447Small ribosomal subunit protein eS10Family
KB [auth Aj]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
KB [auth Aj]IPR005326Plectin/eS10, N-terminalDomain
MB [auth Al]IPR000530Small ribosomal subunit protein eS12Family
MB [auth Al]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
MB [auth Al]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
MB [auth Al]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
NB [auth Am]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
NB [auth Am]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
NB [auth Am]IPR000589Small ribosomal subunit protein uS15Family
NB [auth Am]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
OB [auth An]IPR001971Small ribosomal subunit protein uS11Family
OB [auth An]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
OB [auth An]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PB [auth Ao]IPR002222Small ribosomal subunit protein uS19Family
PB [auth Ao]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
PB [auth Ao]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
PB [auth Ao]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
QB [auth Aq]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
QB [auth Aq]IPR001210Small ribosomal subunit protein eS17Family
QB [auth Aq]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
RB [auth Ar]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
RB [auth Ar]IPR001892Small ribosomal subunit protein uS13Family
RB [auth Ar]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
RB [auth Ar]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
TB [auth At]IPR027486Small ribosomal subunit protein uS10 domainDomain
TB [auth At]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
TB [auth At]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
TB [auth At]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
TB [auth At]IPR001848Small ribosomal subunit protein uS10Family
VB [auth Av]IPR000630Small ribosomal subunit protein uS8Family
VB [auth Av]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
VB [auth Av]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
XB [auth Ax]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
XB [auth Ax]IPR001976Small ribosomal subunit protein eS24Family
XB [auth Ax]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
XB [auth Ax]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
YB [auth Ay]IPR021159Glycerate/sugar phosphate transporter, conserved siteConserved Site
YB [auth Ay]IPR011701Major facilitator superfamilyFamily
YB [auth Ay]IPR004977Small ribosomal subunit protein eS25Family
YB [auth Ay]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
YB [auth Ay]IPR036259MFS transporter superfamilyHomologous Superfamily
YB [auth Ay]IPR051337Organophosphate:Pi AntiporterFamily
YB [auth Ay]IPR020846Major facilitator superfamily domainDomain
ZB [auth AZ]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
ZB [auth AZ]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
ZB [auth AZ]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
ZB [auth AZ]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
ZB [auth AZ]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
ZB [auth AZ]IPR001865Small ribosomal subunit protein uS2Family
ZB [auth AZ]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
AC [auth Ap]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
AC [auth Ap]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
AC [auth Ap]IPR000754Small ribosomal subunit protein uS9Family
AC [auth Ap]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
CC [auth S]IPR039764RNA binding protein HABP4/SERBP1-likeFamily
CC [auth S]IPR006861Hyaluronan/mRNA-binding proteinDomain
DC [auth A]IPR005225Small GTP-binding domainDomain
DC [auth A]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
DC [auth A]IPR000795Translational (tr)-type GTP-binding domainDomain
DC [auth A]IPR000640Elongation factor EFG, domain V-likeDomain
DC [auth A]IPR031157Tr-type G domain, conserved siteConserved Site
DC [auth A]IPR035647EF-G domain III/V-likeHomologous Superfamily
DC [auth A]IPR041095Elongation Factor G, domain IIDomain
DC [auth A]IPR004161Translation elongation factor EFTu-like, domain 2Domain
DC [auth A]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DC [auth A]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
DC [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DC [auth A]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
EC [auth Bs]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
EC [auth Bs]IPR001790Large ribosomal subunit protein uL10Family
EC [auth Bs]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
EC [auth Bs]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
EC [auth Bs]IPR050323Universal ribosomal protein uL10Family
EC [auth Bs]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
FC [auth Bt]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
FC [auth Bt]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
FC [auth Bt]IPR000911Ribosomal protein uL11Family
FC [auth Bt]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
FC [auth Bt]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
FC [auth Bt]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
GC [auth Bv]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
GC [auth Bv]IPR050257Eukaryotic ribosomal RNA-processing and assembly proteinFamily
GC [auth Bv]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
GC [auth Bv]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
GC [auth Bv]IPR002143Large ribosomal subunit protein uL1Family
GC [auth Bv]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
S [auth BP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth BP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth BP]IPR001063Large ribosomal subunit protein uL22Family
S [auth BP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
LB [auth Ak]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
LB [auth Ak]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LB [auth Ak]IPR000266Small ribosomal subunit protein uS17Family
LB [auth Ak]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
LB [auth Ak]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth B5]1MA Parent Component: A

A [auth B5]5MC Parent Component: C

A [auth B5]6MZ Parent Component: A

A [auth B5]A2M Parent Component: A

A [auth B5]OMC Parent Component: C

A [auth B5]OMG Parent Component: G

A [auth B5]OMU Parent Component: U

A [auth B5]PSU Parent Component: U

A [auth B5]UR3 Parent Component: U

A [auth B5]UY1
B [auth B8]OMG Parent Component: G

B [auth B8]PSU Parent Component: U

F [auth BB]HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322
QA [auth Bo]MLZ Parent Component: LYS

RESIDAA0317 , AA0076

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085
TA [auth A2]4AC RESIDAA0317 , AA0076

TA [auth A2]6MZ Parent Component: A

RESIDAA0317 , AA0076

TA [auth A2]A2M Parent Component: A

RESIDAA0317 , AA0076

TA [auth A2]B8N RESIDAA0317 , AA0076

TA [auth A2]MA6 Parent Component: A

RESIDAA0317 , AA0076

TA [auth A2]OMC Parent Component: C

RESIDAA0317 , AA0076

TA [auth A2]OMG Parent Component: G

RESIDAA0317 , AA0076

TA [auth A2]OMU Parent Component: U

RESIDAA0317 , AA0076

TA [auth A2]PSU Parent Component: U

RESIDAA0317 , AA0076

OB [auth An]IAS RESIDAA0317 , AA0076

SB [auth As]NMM Parent Component: ARG

RESIDAA0317 , AA0076

UB [auth Au]AME Parent Component: MET

RESIDAA0317 , AA0076

ZB [auth AZ]SAC Parent Component: SER

RESIDAA0317 , AA0076

DC [auth A]DDE Parent Component: HIS

RESIDAA0317 , AA0076 , AA0040

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049