8POQ

Crystal structure of wolbachia leucyl-tRNA synthetase editing domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.276 
  • R-Value Observed: 0.279 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Targeting a microbiota Wolbachian aminoacyl-tRNA synthetase to block its pathogenic host.

Hoffmann, G.Lukarska, M.Clare, R.H.Masters, E.K.G.Johnston, K.L.Ford, L.Turner, J.D.Ward, S.A.Taylor, M.J.Jensen, M.R.Palencia, A.

(2024) Sci Adv 10: eado1453-eado1453

  • DOI: https://doi.org/10.1126/sciadv.ado1453
  • Primary Citation of Related Structures:  
    8POQ, 8POR, 8POS, 8POT

  • PubMed Abstract: 

    The interplay between humans and their microbiome is crucial for various physiological processes, including nutrient absorption, immune defense, and maintaining homeostasis. Microbiome alterations can directly contribute to diseases or heighten their likelihood. This relationship extends beyond humans; microbiota play vital roles in other organisms, including eukaryotic pathogens causing severe diseases. Notably, Wolbachia , a bacterial microbiota, is essential for parasitic worms responsible for lymphatic filariasis and onchocerciasis, devastating human illnesses. Given the lack of rapid cures for these infections and the limitations of current treatments, new drugs are imperative. Here, we disrupt Wolbachia 's symbiosis with pathogens using boron-based compounds targeting an unprecedented Wolbachia enzyme, leucyl-tRNA synthetase (LeuRS), effectively inhibiting its growth. Through a compound demonstrating anti- Wolbachia efficacy in infected cells, we use biophysical experiments and x-ray crystallography to elucidate the mechanism behind Wolbachia LeuRS inhibition. We reveal that these compounds form adenosine-based adducts inhibiting protein synthesis. Overall, our study underscores the potential of disrupting key microbiota to control infections.


  • Organizational Affiliation

    Institute for Advanced Biosciences (IAB), Structural Biology of Novel Drug Targets in Human Diseases, INSERM U1209, CNRS UMR 5309, Université Grenoble-Alpes, Grenoble 38000, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Leucine--tRNA ligase
A, B, C, D
179Wolbachia endosymbiont strain TRS of Brugia malayiMutation(s): 0 
Gene Names: leuSWbm0605
EC: 6.1.1.4
UniProt
Find proteins for Q5GS31 (Wolbachia sp. subsp. Brugia malayi (strain TRS))
Explore Q5GS31 
Go to UniProtKB:  Q5GS31
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5GS31
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.276 
  • R-Value Observed: 0.279 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.64α = 90
b = 53.64β = 90
c = 267.33γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-20-AMRB-0003-01 AntibiOxaborole
Agence Nationale de la Recherche (ANR)FranceANR JCJC RC18114CC NovoTargetParasite
iNEXTEuropean Union653706

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-12
    Type: Initial release
  • Version 1.1: 2024-07-24
    Changes: Database references