8OSQ

Why does the herpes simplex 1 virus-encoded UL49.5 protein fail to inhibit the TAP-dependent antigen presentation?

• PDB DOI: https://doi.org/10.2210/pdb8OSQ/pdb
• BMRB: 34809

• Classification: VIRAL PROTEIN
• Organism(s): Human alphaherpesvirus 1
• Mutation(s): Yes 


• Deposited: 2023-04-19 Released: 2024-05-01 
• Deposition Author(s): Zhukov, I., Krupa, P., Karska, N., Rodziewicz-Motowidlo, S., Lipinska, A.D.
• Funding Organization(s): Polish National Science Centre

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 20 
• Selection Criteria: all calculated structures submitted 

Literature

Why doesn't the UL49.5 protein from HSV-1 virus inhibit the TAP antigen presentation pathway?

Karska, N., Zhukov, I., Lipinska, A.D., Rodziewicz-Motowidlo, S., Krupa, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: NMR Distance Restraints

Macromolecule Content

• Total Structure Weight: 3.38 kDa 
• Atom Count: 237 
• Modelled Residue Count: 35 
• Deposited Residue Count: 35 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein N	A	35	Human alphaherpesvirus 1	Mutation(s): 2
UniProt
Find proteins for O09800 (Human herpesvirus 1 (strain 17)) Explore O09800  Go to UniProtKB:  O09800

Small Molecules

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ABA	A	L-PEPTIDE LINKING	C4 H9 N O2		ALA
NLE	A	L-PEPTIDE LINKING	C6 H13 N O2		LEU

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 20 
• Selection Criteria: all calculated structures submitted 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-01 
Deposition Author(s): Zhukov, I., Krupa, P., Karska, N., Rodziewicz-Motowidlo, S., Lipinska, A.D.

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Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2020/04/X/ST4/01491

Revision History  

• Version 1.0: 2024-05-01
  Type: Initial release