8OSQ
Why does the herpes simplex 1 virus-encoded UL49.5 protein fail to inhibit the TAP-dependent antigen presentation?
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.4 mM NA- NHSV | 90% H2O/10% D2O | 50 mM | 7.5 | 1 bar | 303 | Varian INOVA 500 |
2 | 2D 1H-1H NOESY | 0.4 mM NA- NHSV | 90% H2O/10% D2O | 50 mM | 7.5 | 1 bar | 303 | Varian INOVA 500 |
3 | 2D 1H-1H NOESY | 0.4 mM NA- NHSV | 90% H2O/10% D2O | 50 mM | 7.5 | 1 bar | 303 | Bruker AVANCE 700 |
4 | 2D 1H-1H TOCSY | 0.4 mM NA- NHSV | 90% H2O/10% D2O | 50 mM | 7.5 | 1 bar | 303 | Bruker AVANCE 700 |
5 | 2D 1H-1H ROESY | 0.4 mM NA- NHSV | 90% H2O/10% D2O | 50 mM | 7.5 | 1 bar | 303 | Bruker AVANCE 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | 243 restraints were used | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VnmrJ | 4.3 | Agilent Inc. |
2 | collection | TopSpin | 3.5 | Bruker Biospin |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | data analysis | Sparky | Goddard | |
5 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |