Structural Basis of gamma-secretase inhibition by anti-cancer clinical drugs
Guo, X., Li, H., Kai, U., Yan, C., Lei, J., Zhou, R., Shi, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Presenilin-1 | A [auth B] | 467 | Homo sapiens | Mutation(s): 0  Gene Names: PSEN1, AD3, PS1, PSNL1 EC: 3.4.23 Membrane Entity: Yes  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P49768 (Homo sapiens) Explore P49768  Go to UniProtKB:  P49768 | |||||
PHAROS:  P49768 GTEx:  ENSG00000080815  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49768 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nicastrin | B [auth A] | 701 | Homo sapiens | Mutation(s): 0  Gene Names: NCSTN, KIAA0253, UNQ1874/PRO4317 Membrane Entity: Yes  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q92542 (Homo sapiens) Explore Q92542  Go to UniProtKB:  Q92542 | |||||
PHAROS:  Q92542 GTEx:  ENSG00000162736  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q92542 | ||||
Glycosylation | |||||
Glycosylation Sites: 12 | Go to GlyGen: Q92542-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-secretase subunit APH-1A | 265 | Homo sapiens | Mutation(s): 0  Gene Names: APH1A, PSF, CGI-78, UNQ579/PRO1141 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96BI3 (Homo sapiens) Explore Q96BI3  Go to UniProtKB:  Q96BI3 | |||||
PHAROS:  Q96BI3 GTEx:  ENSG00000117362  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96BI3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-secretase subunit PEN-2 | 101 | Homo sapiens | Mutation(s): 0  Gene Names: PSENEN, PEN2, MDS033 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NZ42 (Homo sapiens) Explore Q9NZ42  Go to UniProtKB:  Q9NZ42 | |||||
PHAROS:  Q9NZ42 GTEx:  ENSG00000205155  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NZ42 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, G, H, I, J | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G89225LT GlyCosmos:  G89225LT GlyGen:  G89225LT |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PC1 Query on PC1 | K [auth B], V [auth C] | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE C44 H88 N O8 P NRJAVPSFFCBXDT-HUESYALOSA-N | |||
OL9 (Subject of Investigation/LOI) Query on OL9 | L [auth B] | 3-[4-[2,5-bis(fluoranyl)phenyl]-4-(4-chlorophenyl)sulfonyl-cyclohexyl]propanoic acid C21 H21 Cl F2 O4 S XCGJIFAKUZNNOR-QCKZDCLWSA-N | |||
CLR Query on CLR | S [auth C], T [auth C], U [auth C] | CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N | |||
NAG Query on NAG | M [auth A] N [auth A] O [auth A] P [auth A] Q [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Basic Research Program of China (973 Program) | China | 2020YFA0509300 |