CryoEM structure of PS1-containing gamma-secretase in complex with MRK-560
Guo, X., Wang, Y., Zhou, J., Jin, C., Wang, J., Jia, B., Jing, D., Yan, C., Lei, J., Zhou, R., Shi, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nicastrin | 701 | Homo sapiens | Mutation(s): 0  Gene Names: NCSTN, KIAA0253, UNQ1874/PRO4317 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q92542 (Homo sapiens) Explore Q92542  Go to UniProtKB:  Q92542 | |||||
PHAROS:  Q92542 GTEx:  ENSG00000162736  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q92542 | ||||
Glycosylation | |||||
Glycosylation Sites: 12 | Go to GlyGen: Q92542-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Presenilin-1 | 467 | Homo sapiens | Mutation(s): 0  Gene Names: PSEN1, AD3, PS1, PSNL1 EC: 3.4.23 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P49768 (Homo sapiens) Explore P49768  Go to UniProtKB:  P49768 | |||||
PHAROS:  P49768 GTEx:  ENSG00000080815  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49768 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-secretase subunit APH-1A | 265 | Homo sapiens | Mutation(s): 0  Gene Names: APH1A, PSF, CGI-78, UNQ579/PRO1141 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96BI3 (Homo sapiens) Explore Q96BI3  Go to UniProtKB:  Q96BI3 | |||||
PHAROS:  Q96BI3 GTEx:  ENSG00000117362  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96BI3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-secretase subunit PEN-2 | 101 | Homo sapiens | Mutation(s): 0  Gene Names: PSENEN, PEN2, MDS033 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NZ42 (Homo sapiens) Explore Q9NZ42  Go to UniProtKB:  Q9NZ42 | |||||
PHAROS:  Q9NZ42 GTEx:  ENSG00000205155  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NZ42 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, G, H, I, J | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G89225LT GlyCosmos:  G89225LT GlyGen:  G89225LT |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PC1 Query on PC1 | R [auth B], V [auth C] | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE C44 H88 N O8 P NRJAVPSFFCBXDT-HUESYALOSA-N | |||
N60 (Subject of Investigation/LOI) Query on N60 | Q [auth B] | 2,2-dimethyl-N-[(7S)-6-oxo-5,7-dihydrobenzo[d][1]benzazepin-7-yl]-N'-(2,2,3,3,3-pentafluoropropyl)propanediamide C22 H20 F5 N3 O3 OJPLJFIFUQPSJR-INIZCTEOSA-N | |||
CLR Query on CLR | S [auth C], T [auth C], U [auth C] | CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N | |||
NAG Query on NAG | K [auth A] L [auth A] M [auth A] N [auth A] O [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Funding Organization | Location | Grant Number |
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National Basic Research Program of China (973 Program) | China | 2020YFA0509300 |