8JSI | pdb_00008jsi

Deposited: 2023-06-20 Released: 2024-06-26
Deposition Author(s): Li, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Li, Z.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Argonaute family protein	A, D [auth B]	750	Thermococcus thioreducens	Mutation(s): 0 Gene Names: A3L14_06700
UniProt
Find proteins for A0A0Q2M2Z1 (Thermococcus thioreducens) Explore A0A0Q2M2Z1 Go to UniProtKB: A0A0Q2M2Z1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0Q2M2Z1
Sequence Annotations Expand
Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 2
DNA (5'-D(PAPCPAPAPCPCPTPAPCPTPAPCPCPTPCPC)-3')	B [auth T], E [auth U]	16	Thermococcus thioreducens
Sequence Annotations Expand
Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 3
DNA (5'-D(PGPGPAPGPGPTPAPGPTPAPGPGPTPTPGPT)-3')	C [auth G], F [auth H]	16	Thermococcus thioreducens
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A] mmCIF format, chain G [auth A]	G [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain J [auth G] SDF format, chain K [auth B] SDF format, chain L [auth U] SDF format, chain M [auth H] SDF format, chain I [auth T] SDF format, chain H [auth A] MOL2 format, chain J [auth G] MOL2 format, chain K [auth B] MOL2 format, chain L [auth U] MOL2 format, chain M [auth H] MOL2 format, chain I [auth T] MOL2 format, chain H [auth A] mmCIF format, chain J [auth G] mmCIF format, chain K [auth B] mmCIF format, chain L [auth U] mmCIF format, chain M [auth H] mmCIF format, chain I [auth T] mmCIF format, chain H [auth A]	H [auth A] I [auth T] J [auth G] K [auth B] L [auth U] H [auth A], I [auth T], J [auth G], K [auth B], L [auth U], M [auth H]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth T] Focus chain J [auth G] Focus chain K [auth B] Focus chain L [auth U] Focus chain M [auth H] Interactions & Density Focus chain H [auth A] Focus chain I [auth T] Focus chain J [auth G] Focus chain K [auth B] Focus chain L [auth U] Focus chain M [auth H]