8GZ7 | pdb_00008gz7

Octahedral supramolecular assembly of the bicomponent gamma-hemolysin octameric pore complexes from Staphylococcus aureus Newman.

PDB DOI: https://doi.org/10.2210/pdb8GZ7/pdb
EM Map EMD-34391: EMDB EMDataResource

Classification: TOXIN
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2022-09-26 Released: 2023-03-22
Deposition Author(s): Mishra, S., Roy, A., Dutta, S.
Funding Organization(s): Department of Biotechnology (DBT, India), Department of Science & Technology (DST, India)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8GZ7

This is version 1.1 of the entry. See complete history.

Literature

Octahedral supramolecular assembly of the bicomponent gamma-hemolysin octameric pore complexes from Staphylococcus aureus Newman.

Mishra, S., Roy, A., Dutta, S.

To be published.

Macromolecule Content

Total Structure Weight: 247.48 kDa
Atom Count: 17,474
Modeled Residue Count: 2,136
Deposited Residue Count: 2,144
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-hemolysin component B	A, B [auth C], C [auth E], D [auth G]	271	Staphylococcus aureus	Mutation(s): 0 Gene Names: hlgB Membrane Entity: Yes
UniProt
Find proteins for P0A077 (Staphylococcus aureus) Explore P0A077 Go to UniProtKB: P0A077
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A077
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-hemolysin component A	E [auth B], F [auth D], G [auth F], H	265	Staphylococcus aureus	Mutation(s): 0 Gene Names: hlgA, hlg2 Membrane Entity: Yes
UniProt
Find proteins for P0A074 (Staphylococcus aureus) Explore P0A074 Go to UniProtKB: P0A074
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A074
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-03-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Department of Biotechnology (DBT, India)	India	BT/INF/22/SP22844/2017
Department of Science & Technology (DST, India)	India	SR/FST/LSII-039/2015

Revision History (Full details and data files)

Version 1.0: 2023-03-22
Type: Initial release
Version 1.1: 2024-07-24
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.