Structural characterisation of the complete cycle of sliding clamp loading in E. coli
Xu, Z.-Q., Oakley, A.J., Dixon, N.E.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase III subunit delta | 343 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: holA, b0640, JW0635 EC: 2.7.7.7 | ||
UniProt | |||||
Find proteins for P28630 (Escherichia coli (strain K12)) Explore P28630  Go to UniProtKB:  P28630 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P28630 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase III subunit tau | 643 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: dnaX, dnaZ, dnaZX, b0470, JW0459 EC: 2.7.7.7 | ||
UniProt | |||||
Find proteins for P06710 (Escherichia coli (strain K12)) Explore P06710  Go to UniProtKB:  P06710 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06710 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase III subunit delta' | 334 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: holB, b1099, JW1085 EC: 2.7.7.7 | ||
UniProt | |||||
Find proteins for P28631 (Escherichia coli (strain K12)) Explore P28631  Go to UniProtKB:  P28631 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P28631 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase III subunit psi | 137 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: holD, b4372, JW4334 EC: 2.7.7.7 | ||
UniProt | |||||
Find proteins for P28632 (Escherichia coli (strain K12)) Explore P28632  Go to UniProtKB:  P28632 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P28632 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta sliding clamp | G [auth H], H [auth I] | 366 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: dnaN, b3701, JW3678 | |
UniProt | |||||
Find proteins for P0A988 (Escherichia coli (strain K12)) Explore P0A988  Go to UniProtKB:  P0A988 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A988 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 6 | |||||
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Molecule | Chains | Length | Organism | Image | |
Primer | I [auth X] | 23 | Escherichia coli | ||
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Entity ID: 7 | |||||
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Molecule | Chains | Length | Organism | Image | |
Template | J [auth Y] | 68 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | K [auth B], O [auth C], S [auth D] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
ALF Query on ALF | M [auth B], Q [auth C], U [auth D] | TETRAFLUOROALUMINATE ION Al F4 UYOMQIYKOOHAMK-UHFFFAOYSA-J | |||
ZN Query on ZN | N [auth B], R [auth C], V [auth D], W [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | L [auth B], P [auth C], T [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | dev-4788 |
RECONSTRUCTION | RELION | 3.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Australian Research Council (ARC) | Australia | DP210100365 |