8GHM

Hir1 WD40 domains and Asf1/H3/H4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structure of the Hir histone chaperone complex.

Kim, H.J.Szurgot, M.R.van Eeuwen, T.Ricketts, M.D.Basnet, P.Zhang, A.L.Vogt, A.Sharmin, S.Kaplan, C.D.Garcia, B.A.Marmorstein, R.Murakami, K.

(2024) Mol Cell 

  • DOI: https://doi.org/10.1016/j.molcel.2024.05.031
  • Primary Citation of Related Structures:  
    8GHA, 8GHM, 8GIX

  • PubMed Abstract: 

    The evolutionarily conserved HIRA/Hir histone chaperone complex and ASF1a/Asf1 co-chaperone cooperate to deposit histone (H3/H4) 2 tetramers on DNA for replication-independent chromatin assembly. The molecular architecture of the HIRA/Hir complex and its mode of histone deposition have remained unknown. Here, we report the cryo-EM structure of the S. cerevisiae Hir complex with Asf1/H3/H4 at 2.9-6.8 Å resolution. We find that the Hir complex forms an arc-shaped dimer with a Hir1/Hir2/Hir3/Hpc2 stoichiometry of 2/4/2/4. The core of the complex containing two Hir1/Hir2/Hir2 trimers and N-terminal segments of Hir3 forms a central cavity containing two copies of Hpc2, with one engaged by Asf1/H3/H4, in a suitable position to accommodate a histone (H3/H4) 2 tetramer, while the C-terminal segments of Hir3 harbor nucleic acid binding activity to wrap DNA around the Hpc2-assisted histone tetramer. The structure suggests a model for how the Hir/Asf1 complex promotes the formation of histone tetramers for their subsequent deposition onto DNA.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein HIR1
A, G
840Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32479 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP32479
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3B [auth M]136Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: HHT2
UniProt
Find proteins for A0A6A5Q536 (Saccharomyces cerevisiae)
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UniProt GroupA0A6A5Q536
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4C [auth N]103Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: HHF1
UniProt
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UniProt GroupA0A6A5Q1V3
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Histone chaperoneD [auth O]279Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ASF1GI527_G0003133
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Histone transcription regulator 3E [auth J],
F [auth D]
1,648Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Histone promoter control protein 2H [auth F],
I [auth L]
625Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM123233

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release