8GHA

Hir3 Arm/Tail, Hir2 WD40, C-terminal Hpc2

  • Classification: CHAPERONE
  • Organism(s): Saccharomyces cerevisiae
  • Mutation(s): No 

  • Deposited: 2023-03-09 Released: 2024-07-10 
  • Deposition Author(s): Kim, H.J., Murakami, K.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the Hir histone chaperone complex.

Kim, H.J.Szurgot, M.R.van Eeuwen, T.Ricketts, M.D.Basnet, P.Zhang, A.L.Vogt, A.Sharmin, S.Kaplan, C.D.Garcia, B.A.Marmorstein, R.Murakami, K.

(2024) Mol Cell 

  • DOI: https://doi.org/10.1016/j.molcel.2024.05.031
  • Primary Citation of Related Structures:  
    8GHA, 8GHM, 8GIX

  • PubMed Abstract: 

    The evolutionarily conserved HIRA/Hir histone chaperone complex and ASF1a/Asf1 co-chaperone cooperate to deposit histone (H3/H4) 2 tetramers on DNA for replication-independent chromatin assembly. The molecular architecture of the HIRA/Hir complex and its mode of histone deposition have remained unknown. Here, we report the cryo-EM structure of the S. cerevisiae Hir complex with Asf1/H3/H4 at 2.9-6.8 Å resolution. We find that the Hir complex forms an arc-shaped dimer with a Hir1/Hir2/Hir3/Hpc2 stoichiometry of 2/4/2/4. The core of the complex containing two Hir1/Hir2/Hir2 trimers and N-terminal segments of Hir3 forms a central cavity containing two copies of Hpc2, with one engaged by Asf1/H3/H4, in a suitable position to accommodate a histone (H3/H4) 2 tetramer, while the C-terminal segments of Hir3 harbor nucleic acid binding activity to wrap DNA around the Hpc2-assisted histone tetramer. The structure suggests a model for how the Hir/Asf1 complex promotes the formation of histone tetramers for their subsequent deposition onto DNA.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone promoter control protein 2A [auth E]625Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q01448 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q01448 
Go to UniProtKB:  Q01448
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ01448
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone transcription regulator 3B [auth D]1,648Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P47171 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P47171 
Go to UniProtKB:  P47171
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UniProt GroupP47171
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Protein HIR2C [auth B]875Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32480 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32480 
Go to UniProtKB:  P32480
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32480
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM123233

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release