8ERI

HTLV-1 capsid protein full-length

• PDB DOI: https://doi.org/10.2210/pdb8ERI/pdb

• Classification: VIRAL PROTEIN
• Organism(s): HTLV-1 subtype C
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-10-11 Released: 2023-10-18 
• Deposition Author(s): Yu, R.J., Li, N., Jacques, D.A.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free: 0.288 
• R-Value Work: 0.251 
• R-Value Observed: 0.253 

Literature

HTLV-1 capsid protein full-length

Yu, R.J., Li, N., Jacques, D.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Macromolecule Content

• Total Structure Weight: 71.39 kDa 
• Atom Count: 4,927 
• Modelled Residue Count: 618 
• Deposited Residue Count: 642 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
capsid protein p24	A, B, C	214	HTLV-1 subtype C	Mutation(s): 0
UniProt
Find proteins for P0C211 (Human T-cell leukemia virus 1 (isolate Melanesia mel5 subtype C)) Explore P0C211  Go to UniProtKB:  P0C211

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free: 0.288 
• R-Value Work: 0.251 
• R-Value Observed: 0.253 
• Space Group: F 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.079	α = 90
b = 128.663	β = 90
c = 297.34	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-10-18 
Deposition Author(s): Yu, R.J., Li, N., Jacques, D.A.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	214344/Z/18/Z

Revision History  

• Version 1.0: 2023-10-18
  Type: Initial release