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 7XW5 | pdb_00007xw5

TSHR-thyroid stimulating hormone-Gs-ML109 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.96 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7XW5

This is version 1.2 of the entry. See complete history. 

Literature

Hormone- and antibody-mediated activation of the thyrotropin receptor.

Duan, J., Xu, P., Luan, X., Ji, Y., He, X., Song, N., Yuan, Q., Jin, Y., Cheng, X., Jiang, H., Zheng, J., Zhang, S., Jiang, Y., Xu, H.E.

(2022) Nature 609: 854-859

  • DOI: https://doi.org/10.1038/s41586-022-05173-3
  • Primary Citation Related Structures: 
    7XW5, 7XW6, 7XW7

  • PubMed Abstract: 

    Thyroid-stimulating hormone (TSH), through activation of its G-protein-coupled thyrotropin receptor (TSHR), controls the synthesis of thyroid hormone-an essential metabolic hormone 1-3 . Aberrant signalling of TSHR by autoantibodies causes Graves' disease (hyperthyroidism) and hypothyroidism, both of which affect millions of patients worldwide 4 . Here we report the active structures of TSHR with TSH and the activating autoantibody M22 5 , both bound to the allosteric agonist ML-109 6 , as well as an inactivated TSHR structure with the inhibitory antibody K1-70 7 . Both TSH and M22 push the extracellular domain (ECD) of TSHR into an upright active conformation. By contrast, K1-70 blocks TSH binding and cannot push the ECD into the upright conformation. Comparisons of the active and inactivated structures of TSHR with those of the luteinizing hormone/choriogonadotropin receptor (LHCGR) reveal a universal activation mechanism of glycoprotein hormone receptors, in which a conserved ten-residue fragment (P10) from the hinge C-terminal loop mediates ECD interactions with the TSHR transmembrane domain 8 . One notable feature is that there are more than 15 cholesterols surrounding TSHR, supporting its preferential location in lipid rafts 9 . These structures also highlight a similar ECD-push mechanism for TSH and autoantibody M22 to activate TSHR, therefore providing the molecular basis for Graves' disease.


  • Organizational Affiliation: 
    • The CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.

Macromolecule Content 

  • Total Structure Weight: 202.68 kDa 
  • Atom Count: 12,618 
  • Modeled Residue Count: 1,522 
  • Deposited Residue Count: 1,716 
  • Unique protein chains: 7

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short249Homo sapiensMutation(s): 0 
EC: 3.6.5
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens)
Explore P63092 
Go to UniProtKB:  P63092
PHAROS:  P63092
GTEx:  ENSG00000087460 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63092
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1350Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
Entity Groups
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UniProt GroupP62873
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
Entity Groups
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UniProt GroupP59768
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Nanobody35D [auth N]134Lama glamaMutation(s): 0 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Thyrotropin receptorE [auth R]702Homo sapiensMutation(s): 1 
Gene Names: TSHR, LGR3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P16473 (Homo sapiens)
Explore P16473 
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PHAROS:  P16473
GTEx:  ENSG00000165409 
Entity Groups
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UniProt GroupP16473
Glycosylation
Glycosylation Sites: 4Go to GlyGen: P16473-1
Sequence Annotations
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Glycoprotein hormones alpha chainF [auth X]92Homo sapiensMutation(s): 0 
Gene Names: CGA
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P01215 (Homo sapiens)
Explore P01215 
Go to UniProtKB:  P01215
PHAROS:  P01215
GTEx:  ENSG00000135346 
Entity Groups
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UniProt GroupP01215
Glycosylation
Glycosylation Sites: 2Go to GlyGen: P01215-1
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Thyrotropin subunit betaG [auth Y]118Homo sapiensMutation(s): 0 
Gene Names: TSHB
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P01222 (Homo sapiens)
Explore P01222 
Go to UniProtKB:  P01222
PHAROS:  P01222
GTEx:  ENSG00000134200 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01222
Glycosylation
Glycosylation Sites: 1Go to GlyGen: P01222-1
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HOI
(Subject of Investigation/LOI)

Query on HOI



Download:Ideal Coordinates CCD File
L [auth R]~{N}-[4-[[2-methoxy-5-[(2~{S})-5-oxidanyl-4-oxidanylidene-3-(phenylmethyl)-1,2-dihydroquinazolin-2-yl]phenyl]methoxy]phenyl]ethanamide
C31 H29 N3 O5
JRVXFGNCHKHBPA-PMERELPUSA-N
CLR

Query on CLR



Download:Ideal Coordinates CCD File
M [auth R]
N [auth R]
O [auth R]
P [auth R]
Q [auth R]
M [auth R],
N [auth R],
O [auth R],
P [auth R],
Q [auth R],
R,
S [auth R],
T [auth R],
U [auth R],
V [auth R],
W [auth R],
X [auth R],
Y [auth R],
Z [auth R]
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
PLM

Query on PLM



Download:Ideal Coordinates CCD File
AA [auth R],
BA [auth R],
CA [auth R],
DA [auth R],
EA [auth R]
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
NAG

Query on NAG



Download:Ideal Coordinates CCD File
FA [auth X]
GA [auth X]
H [auth R]
HA [auth Y]
I [auth R]
FA [auth X],
GA [auth X],
H [auth R],
HA [auth Y],
I [auth R],
J [auth R],
K [auth R]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.96 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32130022

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-24
    Type: Initial release
  • Version 1.1: 2022-10-05
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Structure summary