7Y24

Cryo-EM structure of the octreotide-bound SSTR2-miniGo-scFv16 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular basis for the selective G protein signaling of somatostatin receptors.

Chen, S.Teng, X.Zheng, S.

(2023) Nat Chem Biol 19: 133-140

  • DOI: https://doi.org/10.1038/s41589-022-01130-3
  • Primary Citation of Related Structures:  
    7Y24, 7Y26, 7Y27

  • PubMed Abstract: 

    G protein-coupled receptors (GPCRs) modulate every aspect of physiological functions mainly through activating heterotrimeric G proteins. A majority of GPCRs promiscuously couple to multiple G protein subtypes. Here we validate that in addition to the well-known G i/o pathway, somatostatin receptor 2 and 5 (SSTR2 and SSTR5) couple to the G q/11 pathway and show that smaller ligands preferentially activate the G i/o pathway. We further determined cryo-electron microscopy structures of the SSTR2‒G o and SSTR2‒G q complexes bound to octreotide and SST-14. Structural and functional analysis revealed that G protein selectivity of SSTRs is not only determined by structural elements in the receptor-G protein interface, but also by the conformation of the agonist-binding pocket. Accordingly, smaller ligands fail to stabilize a broader agonist-binding pocket of SSTRs that is required for efficient G q/11 coupling but not G i/o coupling. Our studies facilitate the design of drugs with selective G protein signaling to improve therapeutic efficacy.


  • Organizational Affiliation

    National Institute of Biological Sciences, Beijing, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(o) subunit alpha224Homo sapiensMutation(s): 7 
Gene Names: GNAO1
EC: 3.6.5
Membrane Entity: Yes 
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Find proteins for P09471 (Homo sapiens)
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PHAROS:  P09471
GTEx:  ENSG00000087258 
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UniProt GroupP09471
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1338Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]56Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
single Fab chain (svFv16)D [auth S]246Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
OctreotideE [auth C]8Homo sapiensMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Somatostatin receptor type 2F [auth E]327Homo sapiensMutation(s): 0 
Gene Names: SSTR2
Membrane Entity: Yes 
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Find proteins for P30874 (Homo sapiens)
Explore P30874 
Go to UniProtKB:  P30874
PHAROS:  P30874
GTEx:  ENSG00000180616 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-19
    Type: Initial release
  • Version 1.1: 2023-02-15
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Structure summary