7JUM

Pfs230 D1 domain in complex with neutralizing antibody LMIV230-01


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A human monoclonal antibody blocks malaria transmission and defines a highly conserved neutralizing epitope on gametes.

Coelho, C.H.Tang, W.K.Burkhardt, M.Galson, J.D.Muratova, O.Salinas, N.D.Alves E Silva, T.L.Reiter, K.MacDonald, N.J.Nguyen, V.Herrera, R.Shimp, R.Narum, D.L.Byrne-Steele, M.Pan, W.Hou, X.Brown, B.Eisenhower, M.Han, J.Jenkins, B.J.Doritchamou, J.Y.A.Smelkinson, M.G.Vega-Rodriguez, J.Truck, J.Taylor, J.J.Sagara, I.Renn, J.P.Tolia, N.H.Duffy, P.E.

(2021) Nat Commun 12: 1750-1750

  • DOI: https://doi.org/10.1038/s41467-021-21955-1
  • Primary Citation of Related Structures:  
    7JUM

  • PubMed Abstract: 

    Malaria elimination requires tools that interrupt parasite transmission. Here, we characterize B cell receptor responses among Malian adults vaccinated against the first domain of the cysteine-rich 230 kDa gamete surface protein Pfs230, a key protein in sexual stage development of P. falciparum parasites. Among nine Pfs230 human monoclonal antibodies (mAbs) that we generated, one potently blocks transmission to mosquitoes in a complement-dependent manner and reacts to the gamete surface; the other eight show only low or no blocking activity. The structure of the transmission-blocking mAb in complex with vaccine antigen reveals a large discontinuous conformational epitope, specific to domain 1 of Pfs230 and comprising six structural elements in the protein. The epitope is conserved, suggesting the transmission-blocking mAb is broadly functional. This study provides a rational basis to improve malaria vaccines and develop therapeutic antibodies for malaria elimination.


  • Organizational Affiliation

    Pathogenesis and Immunity Section, Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gametocyte surface protein P230
A, B, C
195Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: PFS230PF230S230
UniProt
Find proteins for P68874 (Plasmodium falciparum (isolate 3D7))
Explore P68874 
Go to UniProtKB:  P68874
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68874
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Neutralizing antibody, LMIV230-01 Single-chain FvD [auth H],
E [auth I],
F [auth J]
257Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144.02α = 90
b = 144.02β = 90
c = 54.53γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States1ZIAAI001236

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2021-04-07
    Changes: Database references