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Pfs230 D1 domain in complex with neutralizing antibody LMIV230-01
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M MES, pH 6.5, 26 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.43 49.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.02 α = 90 b = 144.02 β = 90 c = 54.53 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.998 19.74 99.43 0.98 5.34 3.22 85033
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 0.59
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.998 19.739 85033 4252 99.188 0.193 0.1909 0.1978 0.2331 0.2384 32.245
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.449 -0.225 -0.449 1.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.358 r_dihedral_angle_4_deg 21.782 r_dihedral_angle_3_deg 13.458 r_dihedral_angle_1_deg 7.734 r_lrange_it 6.604 r_lrange_other 6.529 r_scangle_it 4.72 r_scangle_other 4.72 r_mcangle_it 3.529 r_mcangle_other 3.529
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.358 r_dihedral_angle_4_deg 21.782 r_dihedral_angle_3_deg 13.458 r_dihedral_angle_1_deg 7.734 r_lrange_it 6.604 r_lrange_other 6.529 r_scangle_it 4.72 r_scangle_other 4.72 r_mcangle_it 3.529 r_mcangle_other 3.529 r_scbond_it 3.051 r_scbond_other 3.051 r_mcbond_it 2.438 r_mcbond_other 2.437 r_angle_refined_deg 1.463 r_angle_other_deg 1.23 r_symmetry_nbd_refined 0.235 r_nbd_refined 0.194 r_symmetry_xyhbond_nbd_refined 0.186 r_symmetry_nbd_other 0.183 r_nbd_other 0.178 r_xyhbond_nbd_refined 0.174 r_nbtor_refined 0.159 r_ncsr_local_group_5 0.086 r_ncsr_local_group_6 0.081 r_ncsr_local_group_2 0.08 r_ncsr_local_group_1 0.075 r_symmetry_nbtor_other 0.074 r_ncsr_local_group_3 0.071 r_chiral_restr 0.062 r_ncsr_local_group_4 0.059 r_symmetry_xyhbond_nbd_other 0.044 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9429 Nucleic Acid Atoms Solvent Atoms 1086 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing