6TW8 | pdb_00006tw8

Leishmania major N-myristoyltransferase in complex with indazole inhibitor IMP-917

PDB DOI: https://doi.org/10.2210/pdb6TW8/pdb

Classification: TRANSFERASE
Organism(s): Leishmania major
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-01-12 Released: 2021-07-21
Deposition Author(s): Brannigan, J.A.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free:
0.265 (Depositor), 0.265 (DCC)
R-Value Work:
0.218 (Depositor), 0.218 (DCC)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Leishmania major N-myristoyltransferase in complex with indazole inhibitor IMP-917

Brannigan, J.A.

To be published.

Macromolecule Content

Total Structure Weight: 99.24 kDa
Atom Count: 7,792
Modeled Residue Count: 822
Deposited Residue Count: 836
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycylpeptide N-tetradecanoyltransferase	A [auth AAA], B [auth CCC]	418	Leishmania major	Mutation(s): 0 Gene Names: NMT, LMJF_32_0080 EC: 2.3.1.97
UniProt
Find proteins for Q4Q5S8 (Leishmania major) Explore Q4Q5S8 Go to UniProtKB: Q4Q5S8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4Q5S8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MYA Query on MYA Download:Ideal Coordinates CCD File SDF format, chain C [auth AAA] SDF format, chain F [auth CCC] MOL2 format, chain C [auth AAA] MOL2 format, chain F [auth CCC] mmCIF format, chain C [auth AAA] mmCIF format, chain F [auth CCC]	C [auth AAA], F [auth CCC]	TETRADECANOYL-COA C₃₅ H₆₂ N₇ O₁₇ P₃ S DUAFKXOFBZQTQE-QSGBVPJFSA-N		Interactions Focus chain C [auth AAA] Focus chain F [auth CCC] Interactions & Density Focus chain C [auth AAA] Focus chain F [auth CCC]
9M2 (Subject of Investigation/LOI) Query on 9M2 Download:Ideal Coordinates CCD File SDF format, chain D [auth AAA] SDF format, chain G [auth CCC] MOL2 format, chain D [auth AAA] MOL2 format, chain G [auth CCC] mmCIF format, chain D [auth AAA] mmCIF format, chain G [auth CCC]	D [auth AAA], G [auth CCC]	1-[5-[4-fluoranyl-2-[2-(1,3,5-trimethylpyrazol-4-yl)ethoxy]phenyl]-2~{H}-indazol-3-yl]-~{N},~{N}-dimethyl-methanamine C₂₄ H₂₈ F N₅ O CGEINWMYWNHNPM-UHFFFAOYSA-N		Interactions Focus chain D [auth AAA] Focus chain G [auth CCC] Interactions & Density Focus chain D [auth AAA] Focus chain G [auth CCC]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain E [auth AAA] SDF format, chain H [auth CCC] MOL2 format, chain E [auth AAA] MOL2 format, chain H [auth CCC] mmCIF format, chain E [auth AAA] mmCIF format, chain H [auth CCC]	E [auth AAA], H [auth CCC]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth AAA] Focus chain H [auth CCC] Interactions & Density Focus chain E [auth AAA] Focus chain H [auth CCC]