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Leishmania major N-myristoyltransferase in complex with indazole inhibitor IMP-917
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 30% PEG 1500, 0.2 M NaCl, 0.1 M Na cacodylate, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.49 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.02 α = 90 b = 89.82 β = 104.27 c = 97.18 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 65 99.7 0.088 8.7 4.1 82872
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.82 99.7 0.666 1.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.79 65 82848 4145 99.676 0.22 0.2181 0.218 0.2645 0.2645 21.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.058 0.446 -0.412 0.216
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.607 r_dihedral_angle_4_deg 18.955 r_dihedral_angle_3_deg 15.834 r_dihedral_angle_1_deg 6.584 r_lrange_it 5.272 r_scangle_it 3.158 r_mcangle_it 2.814 r_scbond_it 2.145 r_mcbond_it 1.831 r_angle_refined_deg 1.667
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.607 r_dihedral_angle_4_deg 18.955 r_dihedral_angle_3_deg 15.834 r_dihedral_angle_1_deg 6.584 r_lrange_it 5.272 r_scangle_it 3.158 r_mcangle_it 2.814 r_scbond_it 2.145 r_mcbond_it 1.831 r_angle_refined_deg 1.667 r_nbtor_refined 0.317 r_nbd_refined 0.219 r_symmetry_nbd_refined 0.188 r_symmetry_xyhbond_nbd_refined 0.183 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.118 r_gen_planes_refined 0.01 r_bond_refined_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6708 Nucleic Acid Atoms Solvent Atoms 634 Heterogen Atoms 190
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing