6P9Y

PAC1 GPCR Receptor complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Toward a Structural Understanding of Class B GPCR Peptide Binding and Activation.

Liang, Y.L.Belousoff, M.J.Zhao, P.Koole, C.Fletcher, M.M.Truong, T.T.Julita, V.Christopoulos, G.Xu, H.E.Zhang, Y.Khoshouei, M.Christopoulos, A.Danev, R.Sexton, P.M.Wootten, D.

(2020) Mol Cell 77: 656-668.e5

  • DOI: https://doi.org/10.1016/j.molcel.2020.01.012
  • Primary Citation of Related Structures:  
    6P9X, 6P9Y

  • PubMed Abstract: 

    Class B G protein-coupled receptors (GPCRs) are important therapeutic targets for major diseases. Here, we present structures of peptide and Gs-bound pituitary adenylate cyclase-activating peptide, PAC1 receptor, and corticotropin-releasing factor (CRF), (CRF1) receptor. Together with recently solved structures, these provide coverage of the major class B GPCR subfamilies. Diverse orientations of the extracellular domain to the receptor core in different receptors are at least partially dependent on evolutionary conservation in the structure and nature of peptide interactions. Differences in peptide interactions to the receptor core also influence the interlinked TM2-TM1-TM6/ECL3/TM7 domain, and this is likely important in their diverse signaling. However, common conformational reorganization of ECL2, linked to reorganization of ICL2, modulates G protein contacts. Comparison between receptors reveals ICL2 as a key domain forming dynamic G protein interactions in a receptor- and ligand-specific manner. This work advances our understanding of class B GPCR activation and Gs coupling.


  • Organizational Affiliation

    Drug Discovery Biology and Department of Pharmacology, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, VIC, Australia.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short394Homo sapiensMutation(s): 0 
Gene Names: GNASGNAS1GSP
EC: 3.6.5
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens)
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Go to UniProtKB:  P63092
PHAROS:  P63092
GTEx:  ENSG00000087460 
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UniProt GroupP63092
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1350Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35D [auth N]138Lama glamaMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Pituitary adenylate cyclase-activating polypeptideE [auth P]39Homo sapiensMutation(s): 1 
Membrane Entity: Yes 
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Find proteins for P18509 (Homo sapiens)
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PHAROS:  P18509
GTEx:  ENSG00000141433 
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UniProt GroupP18509
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Pituitary adenylate cyclase-activating polypeptide type I receptorF [auth R]483Homo sapiensMutation(s): 0 
Gene Names: ADCYAP1R1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P41586 (Homo sapiens)
Explore P41586 
Go to UniProtKB:  P41586
PHAROS:  P41586
GTEx:  ENSG00000078549 
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UniProt GroupP41586
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (Australia)Australia1065410
National Health and Medical Research Council (Australia)Australia1061044
National Health and Medical Research Council (Australia)Australia1120919
National Health and Medical Research Council (Australia)Australia1126857
National Health and Medical Research Council (Australia)Australia1055134
National Health and Medical Research Council (Australia)Australia1159006
National Health and Medical Research Council (Australia)Australia1150083
Japan Society for the Promotion of ScienceJapanKAKENHI #18H06043
Japan Society for the Promotion of ScienceJapanPRESTO #18069571

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-05
    Type: Initial release
  • Version 1.1: 2020-02-12
    Changes: Database references
  • Version 1.2: 2020-02-19
    Changes: Database references
  • Version 1.3: 2024-10-16
    Changes: Data collection, Database references, Structure summary