6L7I | pdb_00006l7i

Signal substraction of TcdB1-TccC2 and part of TcdA1

• PDB DOI: https://doi.org/10.2210/pdb6L7I/pdb
• EM Map EMD-0844: EMDB EMDataResource

• Classification: TOXIN/PROTEIN TRANSPORT
• Organism(s): Photorhabdus luminescens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-11-01 Released: 2021-03-31 
• Deposition Author(s): Yan, Z.F., Yang, G.W.

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.90 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Signal substraction of TcdB1-TccC2 and part of TcdA1

Yan, Z.F., Zhang, N., Yang, G.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 8-mer - A5B1C1D1 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 5-mer - A5 

Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 5-mer - A5 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 343.24 kDa 
• Atom Count: 23,561 
• Modeled Residue Count: 3,022 
• Deposited Residue Count: 3,106 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TcdA1	A, B, C, D, E	190	Photorhabdus luminescens	Mutation(s): 0  Gene Names: tcdA, tcdA1
UniProt
Find proteins for Q9RN43 (Photorhabdus luminescens) Explore Q9RN43  Go to UniProtKB:  Q9RN43

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TcdB1	F	1,476	Photorhabdus luminescens	Mutation(s): 0  Gene Names: tcdB1
UniProt
Find proteins for Q93EP6 (Photorhabdus luminescens) Explore Q93EP6  Go to UniProtKB:  Q93EP6

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
TccC2	G	664	Photorhabdus luminescens	Mutation(s): 0  Gene Names: TccC2
UniProt
Find proteins for Q93EP1 (Photorhabdus luminescens) Explore Q93EP1  Go to UniProtKB:  Q93EP1

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
TccC2	H	16	Photorhabdus luminescens	Mutation(s): 0  Gene Names: TccC2
UniProt
Find proteins for Q93EP1 (Photorhabdus luminescens) Explore Q93EP1  Go to UniProtKB:  Q93EP1

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.90 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-03-31 
Deposition Author(s): Yan, Z.F., Yang, G.W.

Revision History  

• Version 1.0: 2021-03-31
  Type: Initial release
  
• Version 1.1: 2024-10-23
  Changes: Data collection, Database references, Structure summary