6KI0 | pdb_00006ki0

Crystal Structure of Human ASC-CARD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.252 (Depositor), 0.250 (DCC) 
  • R-Value Work: 
    0.220 (Depositor), 0.224 (DCC) 
  • R-Value Observed: 
    0.222 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 2.2 of the entry. See complete history

Literature

Homotypic CARD-CARD interaction is critical for the activation of NLRP1 inflammasome.

Xu, Z.Zhou, Y.Liu, M.Ma, H.Sun, L.Zahid, A.Chen, Y.Zhou, R.Cao, M.Wu, D.Zhao, W.Li, B.Jin, T.

(2021) Cell Death Dis 12: 57-57

  • DOI: https://doi.org/10.1038/s41419-020-03342-8
  • Primary Citation Related Structures: 
    6KI0

  • PubMed Abstract: 

    Cytosolic inflammasomes are supramolecular complexes that are formed in response to intracellular pathogens and danger signals. However, as to date, the detailed description of a homotypic caspase recruitment domain (CARD) interaction between NLRP1 and ASC has not been presented. We found the CARD-CARD interaction between purified NLRP1 CARD and ASC CARD experimentally and the filamentous supramolecular complex formation in an in vitro proteins solution. Moreover, we determined a high-resolution crystal structure of the death domain fold of the human ASC CARD . Mutational and structural analysis revealed three conserved interfaces of the death domain superfamily (Type I, II, and III), which mediate the assembly of the NLRP1 CARD /ASC CARD complex. In addition, we validated the role of the three major interfaces of CARDs in assembly and activation of NLRP1 inflammasome in vitro. Our findings suggest a Mosaic model of homotypic CARD interactions for the activation of NLRP1 inflammasome. The Mosaic model provides insights into the mechanisms of inflammasome assembly and signal transduction amplification.


  • Organizational Affiliation
    • Department of Obstetrics and Gynecology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China.

Macromolecule Content 

  • Total Structure Weight: 104.28 kDa 
  • Atom Count: 7,479 
  • Modeled Residue Count: 917 
  • Deposited Residue Count: 932 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Maltose/maltodextrin-binding periplasmic protein,Apoptosis-associated speck-like protein containing a CARD
A, B
466Escherichia coli K-12Homo sapiens
This entity is chimeric
Mutation(s): 5 
Gene Names: malEb4034JW3994PYCARDASCCARD5TMS1
UniProt & NIH Common Fund Data Resources
Find proteins for P0AEX9 (Escherichia coli (strain K12))
Explore P0AEX9 
Go to UniProtKB:  P0AEX9
Find proteins for Q9ULZ3 (Homo sapiens)
Explore Q9ULZ3 
Go to UniProtKB:  Q9ULZ3
PHAROS:  Q9ULZ3
GTEx:  ENSG00000103490 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP0AEX9Q9ULZ3
Sequence Annotations
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Reference Sequence

Oligosaccharides

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Entity ID: 2
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
C, D
3N/A
Glycosylation Resources
GlyTouCan: G96370VA
GlyCosmos: G96370VA
GlyGen: G96370VA

Biologically Interesting Molecules (External Reference) 

1 Unique

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.252 (Depositor), 0.250 (DCC) 
  • R-Value Work:  0.220 (Depositor), 0.224 (DCC) 
  • R-Value Observed: 0.222 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 175.76α = 90
b = 56.02β = 106.58
c = 146.93γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81872110
National Natural Science Foundation of ChinaChina81272881

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-22
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
  • Version 2.1: 2021-02-03
    Changes: Database references, Structure summary
  • Version 2.2: 2023-11-22
    Changes: Data collection, Database references, Refinement description