Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
Nakamichi, Y., Higashiura, A., Narita, H., Hagiwara, K., Uehara-Ichiki, T., Omura, T., Nakagawa, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mRNA capping enzyme P5 | 804 | Rice dwarf virus (isolate O) | Mutation(s): 0  EC: 2.7.7.50 | ||
UniProt | |||||
Find proteins for P14583 (Rice dwarf virus (isolate Akita)) Explore P14583  Go to UniProtKB:  P14583 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14583 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SAM Query on SAM | E [auth A], F [auth A], K [auth B], P [auth C], Q [auth C] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N | |||
FLC Query on FLC | J [auth A], O [auth B], U [auth D] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K | |||
EDO Query on EDO | G [auth A] H [auth A] I [auth A] L [auth B] M [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 60.182 | α = 73.8 |
b = 122.778 | β = 87.14 |
c = 129.257 | γ = 86.08 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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JSPS | Japan | JP25251009 |