5WLC | pdb_00005wlc

The complete structure of the small subunit processome

PDB DOI: https://doi.org/10.2210/pdb5WLC/pdb
NAKB: 5WLC
EM Map EMD-8859: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Saccharomyces cerevisiae BY4741
Mutation(s): No

Deposited: 2017-07-26 Released: 2017-09-27
Deposition Author(s): Barandun, J., Chaker-Margot, M., Hunziker, M., Klinge, S.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), European Molecular Biology Organization (EMBO), Swiss National Science Foundation, Natural Sciences and Engineering Research Council (NSERC, Canada), Human Frontier Science Program (HFSP)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.5 of the entry. See complete history.

Literature

The complete structure of the small-subunit processome.

Barandun, J., Chaker-Margot, M., Hunziker, M., Molloy, K.R., Chait, B.T., Klinge, S.

(2017) Nat Struct Mol Biol 24: 944-953

PubMed: 28945246 Search on PubMed
DOI: https://doi.org/10.1038/nsmb.3472
Primary Citation Related Structures:
5WLC

PubMed Abstract:
The small-subunit processome represents the earliest stable precursor of the eukaryotic small ribosomal subunit. Here we present the cryo-EM structure of the Saccharomyces cerevisiae small-subunit processome at an overall resolution of 3.8 Å, which provides an essentially complete near-atomic model of this assembly. In this nucleolar superstructure, 51 ribosome-assembly factors and two RNAs encapsulate the 18S rRNA precursor and 15 ribosomal proteins in a state that precedes pre-rRNA cleavage at site A1. Extended flexible proteins are employed to connect distant sites in this particle. Molecular mimicry and steric hindrance, as well as protein- and RNA-mediated RNA remodeling, are used in a concerted fashion to prevent the premature formation of the central pseudoknot and its surrounding elements within the small ribosomal subunit.

Organizational Affiliation

Laboratory of Protein and Nucleic Acid Chemistry, The Rockefeller University, New York, New York, USA.

Macromolecule Content

Total Structure Weight: 4,499.18 kDa
Atom Count: 196,921
Modeled Residue Count: 24,316
Deposited Residue Count: 35,703
Unique protein chains: 63
Unique nucleic acid chains: 3

Macromolecules

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS18_uS13	D [auth L3]	146	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX55 Go to UniProtKB: P0CX55
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX55
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS4_eS4	E [auth L4]	261	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX35 Go to UniProtKB: P0CX35
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX35
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS5_uS7	F [auth L5]	225	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for A0A1L4AA68 (Saccharomyces cerevisiae) Explore A0A1L4AA68 Go to UniProtKB: A0A1L4AA68
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1L4AA68
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS6_eS6	G [auth L6]	236	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX37 Go to UniProtKB: P0CX37
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX37
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS7_eS7	H [auth L7]	190	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26786 Go to UniProtKB: P26786
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P26786
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS8_eS8	I [auth L8]	200	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX39 Go to UniProtKB: P0CX39
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX39
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS9_uS4	J [auth L9]	197	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O13516 Go to UniProtKB: O13516
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O13516
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS16_uS9	K [auth LC]	143	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX51 Go to UniProtKB: P0CX51
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX51
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS11_uS17	L [auth LD]	156	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX47 Go to UniProtKB: P0CX47
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX47
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS22_uS8	M [auth LE]	130	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W1 Go to UniProtKB: P0C0W1
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0C0W1
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS24_eS24	N [auth LF]	135	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX31 Go to UniProtKB: P0CX31
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CX31
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS28_eS28	O [auth LG]	67	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E7X9 Go to UniProtKB: Q3E7X9
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3E7X9
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp17	P [auth LH]	896	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q02931 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02931 Go to UniProtKB: Q02931
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q02931
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp8	Q [auth LI]	713	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P53276 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53276 Go to UniProtKB: P53276
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53276
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp15	R [auth LJ]	513	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q04305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04305 Go to UniProtKB: Q04305
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UniProt Group	Q04305
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp9	S [auth LK]	575	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P38882 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38882 Go to UniProtKB: P38882
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UniProt Group	P38882
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp5	T [auth LL]	643	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q04177 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04177 Go to UniProtKB: Q04177
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UniProt Group	Q04177
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp10	U [auth LM]	1,769	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P42945 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P42945 Go to UniProtKB: P42945
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UniProt Group	P42945
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp4	V [auth LN]	776	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q06679 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06679 Go to UniProtKB: Q06679
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q06679
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp1	W [auth LO]	923	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P25635 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25635 Go to UniProtKB: P25635
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UniProt Group	P25635
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp6	X [auth LP]	440	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q02354 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02354 Go to UniProtKB: Q02354
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UniProt Group	Q02354
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp12	Y [auth LQ]	943	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q12220 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12220 Go to UniProtKB: Q12220
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UniProt Group	Q12220
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp13	Z [auth LR]	817	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q05946 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q05946 Go to UniProtKB: Q05946
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UniProt Group	Q05946
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp18	AA [auth LS]	594	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P40362 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40362 Go to UniProtKB: P40362
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UniProt Group	P40362
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp21	BA [auth LT]	939	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q06078 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06078 Go to UniProtKB: Q06078
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q06078
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Sof1	CA [auth LU]	489	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P33750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P33750 Go to UniProtKB: P33750
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P33750
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Enp2	DA [auth LV]	707	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P48234 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P48234 Go to UniProtKB: P48234
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UniProt Group	P48234
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp7	EA [auth LW]	554	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P40055 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40055 Go to UniProtKB: P40055
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UniProt Group	P40055
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Kre33	FA [auth LX], GA [auth LY]	1,056	Saccharomyces cerevisiae BY4741	Mutation(s): 0 EC: 2.3.1
UniProt
Find proteins for P53914 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53914 Go to UniProtKB: P53914
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UniProt Group	P53914
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Imp3	HA [auth LZ]	183	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P32899 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32899 Go to UniProtKB: P32899
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UniProt Group	P32899
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Mpp10	IA [auth NA]	593	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P47083 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47083 Go to UniProtKB: P47083
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UniProt Group	P47083
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
Sas10	JA [auth NB]	610	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q12136 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12136 Go to UniProtKB: Q12136
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UniProt Group	Q12136
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
Lcp5	KA [auth NC]	357	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P40079 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40079 Go to UniProtKB: P40079
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UniProt Group	P40079
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Bud21	LA [auth ND]	214	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q08492 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08492 Go to UniProtKB: Q08492
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UniProt Group	Q08492
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
Faf1	MA [auth NE]	346	Saccharomyces cerevisiae BY4741	Mutation(s): 0
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Find proteins for P40546 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40546 Go to UniProtKB: P40546
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UniProt Group	P40546
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS13_uS15	NA [auth NF]	151	Saccharomyces cerevisiae BY4741	Mutation(s): 0
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Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05756 Go to UniProtKB: P05756
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UniProt Group	P05756
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS14_uS11	OA [auth NG]	137	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P06367 Go to UniProtKB: P06367
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UniProt Group	P06367
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp22	PA [auth NH]	1,237	Saccharomyces cerevisiae BY4741	Mutation(s): 0
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Find proteins for P53254 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53254 Go to UniProtKB: P53254
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UniProt Group	P53254
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Rrp7	QA [auth NI]	297	Saccharomyces cerevisiae BY4741	Mutation(s): 0
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Find proteins for P25368 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25368 Go to UniProtKB: P25368
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UniProt Group	P25368
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Rrp5	RA [auth NJ]	1,729	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q05022 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q05022 Go to UniProtKB: Q05022
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UniProt Group	Q05022
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Krr1	SA [auth NK]	316	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P25586 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25586 Go to UniProtKB: P25586
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UniProt Group	P25586
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Nop56	TA [auth SA]	504	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q12460 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12460 Go to UniProtKB: Q12460
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UniProt Group	Q12460
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
Nop58	UA [auth SB]	511	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q12499 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12499 Go to UniProtKB: Q12499
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UniProt Group	Q12499
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Nop1	VA [auth SC], WA [auth SD]	327	Saccharomyces cerevisiae BY4741	Mutation(s): 0 EC: 2.1.1
UniProt
Find proteins for P15646 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15646 Go to UniProtKB: P15646
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UniProt Group	P15646
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Snu13	XA [auth SE], YA [auth SF]	126	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P39990 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39990 Go to UniProtKB: P39990
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UniProt Group	P39990
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Rrp9	ZA [auth SG]	573	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q06506 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06506 Go to UniProtKB: Q06506
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UniProt Group	Q06506
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Rcl1	AB [auth SH]	367	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q08096 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08096 Go to UniProtKB: Q08096
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UniProt Group	Q08096
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Bms1	BB [auth SI]	1,184	Saccharomyces cerevisiae BY4741	Mutation(s): 0 EC: 3.6.5
UniProt
Find proteins for Q08965 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08965 Go to UniProtKB: Q08965
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UniProt Group	Q08965
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Emg1	CB [auth SJ], DB [auth SK]	252	Saccharomyces cerevisiae BY4741	Mutation(s): 0 EC: 2.1.1.260
UniProt
Find proteins for Q06287 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06287 Go to UniProtKB: Q06287
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UniProt Group	Q06287
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp24	EB [auth SL]	189	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q05498 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q05498 Go to UniProtKB: Q05498
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UniProt Group	Q05498
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
Imp4	FB [auth SM]	290	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P53941 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53941 Go to UniProtKB: P53941
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UniProt Group	P53941
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp30	GB [auth SN]	274	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P36144 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36144 Go to UniProtKB: P36144
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UniProt Group	P36144
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Pno1	HB [auth SO]	274	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q99216 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q99216 Go to UniProtKB: Q99216
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UniProt Group	Q99216
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp20	IB [auth SP]	982	Saccharomyces cerevisiae BY4741	Mutation(s): 0

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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Fcf2	JB [auth SQ]	217	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q12035 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12035 Go to UniProtKB: Q12035
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UniProt Group	Q12035
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
rpS23_uS12	KB [auth SR]	145	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P0CY39 (Naumovozyma castellii) Explore P0CY39 Go to UniProtKB: P0CY39
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UniProt Group	P0CY39
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp14	LB [auth SS]	898	Saccharomyces cerevisiae BY4741	Mutation(s): 0
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Find proteins for Q04500 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04500 Go to UniProtKB: Q04500
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UniProt Group	Q04500
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
Nop14	MB [auth ST]	792	Saccharomyces cerevisiae BY4741	Mutation(s): 0
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Find proteins for Q99207 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q99207 Go to UniProtKB: Q99207
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
Noc4	NB [auth SU]	552	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for Q06512 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06512 Go to UniProtKB: Q06512
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UniProt Group	Q06512
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
Rrt14	OB [auth SV]	206	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P40470 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40470 Go to UniProtKB: P40470
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UniProt Group	P40470
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
Unassigned peptides	PB [auth SX]	103	Saccharomyces cerevisiae BY4741	Mutation(s): 0

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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Utp11	QB [auth SY]	250	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P34247 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P34247 Go to UniProtKB: P34247
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UniProt Group	P34247
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
Enp1	RB [auth SZ]	483	Saccharomyces cerevisiae BY4741	Mutation(s): 0
UniProt
Find proteins for P38333 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38333 Go to UniProtKB: P38333
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UniProt Group	P38333
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Molecule	Chains	Length	Organism
Entity ID: 1
5' ETS	A [auth L0]	700	Saccharomyces cerevisiae BY4741
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Molecule	Chains	Length	Organism
Entity ID: 2
18S pre-rRNA	B [auth L1]	1,807	Saccharomyces cerevisiae BY4741
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Molecule	Chains	Length	Organism
Entity ID: 3
U3 snoRNA	C [auth L2]	333	Saccharomyces cerevisiae BY4741
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Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain SB [auth SL] MOL2 format, chain SB [auth SL] mmCIF format, chain SB [auth SL]	SB [auth SL]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain SB [auth SL] Interactions & Density Focus chain SB [auth SL]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	2
MODEL REFINEMENT	PHENIX	1.12rc1

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2017-09-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1DP2GM123459
European Molecular Biology Organization (EMBO)	European Union	ALTF 51-2014
Swiss National Science Foundation	Switzerland	155515
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	PGS-D
Human Frontier Science Program (HFSP)	France	--

Revision History (Full details and data files)

Version 1.0: 2017-09-27
Type: Initial release
Version 1.1: 2017-10-11
Changes: Database references
Version 1.2: 2017-10-18
Changes: Author supporting evidence
Version 1.3: 2017-11-22
Changes: Database references
Version 1.4: 2020-01-01
Changes: Author supporting evidence
Version 1.5: 2024-03-13
Changes: Data collection, Database references

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Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5WLC | pdb_00005wlc

The complete structure of the small subunit processome

Literature

The complete structure of the small-subunit processome.

Biological Assembly 1

Macromolecules

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UniProt

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