5WLC

The complete structure of the small subunit processome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8102132 3000100 SCOP2B (2021-05-27)
L [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2021-05-27)
M [auth LE]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2021-05-27)
O [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2021-05-27)
Z [auth LR]SCOP2 FamilyUtp13-like8061269 4007179 SCOP2 (2021-05-27)
Z [auth LR]SCOP2 SuperfamilyUTPB complex component-like8061270 3002330 SCOP2 (2021-05-27)
NA [auth NF]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2021-05-27)
NA [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2021-05-27)
OA [auth NG]SCOP2B SuperfamilyTranslational machinery components8095805 3000571 SCOP2B (2021-05-27)
PA [auth NH]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like8053729 3001147 SCOP2B (2021-05-27)
PA [auth NH]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like8053730 3001147 SCOP2B (2021-05-27)
PA [auth NH]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like8053727 3000941 SCOP2B (2021-05-27)
PA [auth NH]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like8053728 3000941 SCOP2B (2021-05-27)
PA [auth NH]SCOP2B SuperfamilyNucleotidyltransferase-like8053725 3000129 SCOP2B (2021-05-27)
PA [auth NH]SCOP2B SuperfamilyNucleotidyltransferase-like8053726 3000129 SCOP2B (2021-05-27)
QA [auth NI]SCOP2B SuperfamilyRRP7 C-terminal domain-like8053722 3002219 SCOP2B (2021-05-27)
QA [auth NI]SCOP2B SuperfamilyRNA-binding domain RBD8053724 3000110 SCOP2B (2021-05-27)
VA [auth SC]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063662 3000118 SCOP2B (2021-05-27)
WA [auth SD]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063662 3000118 SCOP2B (2021-05-27)
XA [auth SE]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2021-05-27)
YA [auth SF]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2021-05-27)
E [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2021-05-27)
E [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2021-05-27)
E [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2021-05-27)
CB [auth SJ]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2021-05-27)
DB [auth SK]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2021-05-27)
F [auth L5]SCOP2 FamilyRibosomal protein S78065998 4001112 SCOP2 (2021-05-27)
F [auth L5]SCOP2 SuperfamilyRibosomal protein S78065999 3000799 SCOP2 (2021-05-27)
G [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2021-05-27)
I [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth L9]PF00163,PF01479e5wlcL91 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
K [auth LC]PF00380e5wlcLC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
L [auth LD]PF00366,PF16205e5wlcLD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
M [auth LE]PF00410e5wlcLE1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
M [auth LE]PF00410e5wlcLE2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
N [auth LF]PF01282e5wlcLF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
O [auth LG]PF01200e5wlcLG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
R [auth LJ]PF00400e5wlcLJ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
R [auth LJ]PF09384e5wlcLJ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF09384ECOD (1.6)
S [auth LK]F_UNCLASSIFIEDe5wlcLK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: F_UNCLASSIFIEDECOD (1.6)
T [auth LL]F_UNCLASSIFIEDe5wlcLL2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
T [auth LL]PF04003e5wlcLL1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
U [auth LM]PF12397e5wlcLM1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF12397ECOD (1.6)
V [auth LN]F_UNCLASSIFIEDe5wlcLN2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
V [auth LN]PF00400e5wlcLN1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]PF00400e5wlcLO2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]PF04003e5wlcLO3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
Y [auth LQ]PF00400e5wlcLQ2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Y [auth LQ]PF04003e5wlcLQ3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
DA [auth LV]F_UNCLASSIFIEDe5wlcLV1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
EA [auth LW]PF00400,PF08149e5wlcLW1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400,PF08149ECOD (1.6)
HA [auth LZ]PF00163,PF01479e5wlcLZ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
NA [auth NF]PF08069e5wlcNF2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
NA [auth NF]PF00312e5wlcNF1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
D [auth L3]PF00416e5wlcL31 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
OA [auth NG]PF00411e5wlcNG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
PA [auth NH]PF17403e5wlcNH3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17403ECOD (1.6)
PA [auth NH]PF17406e5wlcNH6 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17406ECOD (1.6)
PA [auth NH]PF17404e5wlcNH2 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17404ECOD (1.6)
PA [auth NH]PF17407e5wlcNH1 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17407ECOD (1.6)
PA [auth NH]PF03813e5wlcNH4 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF03813ECOD (1.6)
PA [auth NH]PF17405e5wlcNH5 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF17405ECOD (1.6)
QA [auth NI]PF17799e5wlcNI1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF17799ECOD (1.6)
RA [auth NJ]F_UNCLASSIFIEDe5wlcNJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
SA [auth NK]PF17903e5wlcNK2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
SA [auth NK]PF21800e5wlcNK1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF21800ECOD (1.6)
TA [auth SA]PF01798e5wlcSA2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: PF01798ECOD (1.6)
TA [auth SA]PF01798e5wlcSA3 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF01798ECOD (1.6)
TA [auth SA]PF08156e5wlcSA1 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF08156ECOD (1.6)
VA [auth SC]PF01269e5wlcSC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
WA [auth SD]PF01269e5wlcSD1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
XA [auth SE]PF01248e5wlcSE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
YA [auth SF]PF01248e5wlcSF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
ZA [auth SG]PF00400e5wlcSG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
E [auth L4]PF00900e5wlcL41 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth L4]PF00467,PF16121e5wlcL42 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth L4]PF00900,PF01479,PF08071e5wlcL43 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
AB [auth SH]PF01137e5wlcSH2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: PF01137ECOD (1.6)
AB [auth SH]PF05189e5wlcSH1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: PF05189ECOD (1.6)
CB [auth SJ]PF03587e5wlcSJ1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
DB [auth SK]PF03587e5wlcSK1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
GB [auth SN]PF00687e5wlcSN1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
GB [auth SN]PF00687e5wlcSN2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
HB [auth SO]PF17903e5wlcSO1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
HB [auth SO]PF22891e5wlcSO2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF22891ECOD (1.6)
KB [auth SR]PF00164e5wlcSR1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
F [auth L5]PF00177e5wlcL51 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
RB [auth SZ]PF05291e5wlcSZ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF05291ECOD (1.6)
G [auth L6]PF01092e5wlcL61 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
H [auth L7]PF01251e5wlcL71 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
I [auth L8]PF01201e5wlcL81 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
L [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth LE]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
N [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
O [auth LG]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
P [auth LH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Q [auth LI]PF22542Utp8, C-terminal (Utp8_C)Utp8, C-terminalThis domain is found at the C-terminal end of of U3 small nucleolar RNA-associated protein 8 from Saccharomyces cerevisiae (Utp8) and similar proteins from fungi. Utp8 is an essential component of the nuclear tRNA export machinery in S.cerevisiae. It ...This domain is found at the C-terminal end of of U3 small nucleolar RNA-associated protein 8 from Saccharomyces cerevisiae (Utp8) and similar proteins from fungi. Utp8 is an essential component of the nuclear tRNA export machinery in S.cerevisiae. It is a tRNA binding protein that act at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [1]. This domain shows an all-alpha structure.
Domain
R [auth LJ]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
R [auth LJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
T [auth LL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
U [auth LM]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
V [auth LN]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth LO]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
W [auth LO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
X [auth LP]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Family
X [auth LP]PF05843Suppressor of forked protein (Suf) (Suf)Suppressor of forked protein (Suf)- Repeat
Y [auth LQ]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
Y [auth LQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
AA [auth LS]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth LT]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.Domain
BA [auth LT]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CA [auth LU]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
CA [auth LU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth LW]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domainThis C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [1].Domain
EA [auth LW]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth LX],
GA [auth LY]
PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminal- Family
HA [auth LZ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
HA [auth LZ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
JA [auth NB]PF09368Sas10 C-terminal domain (Sas10)Sas10 C-terminal domainSas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit.Domain
LA [auth ND]PF08297U3 snoRNA associated (U3_snoRNA_assoc)U3 snoRNA associated- Family
NA [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
D [auth L3]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
OA [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PA [auth NH]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
PA [auth NH]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
QA [auth NI]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1].Domain
QA [auth NI]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2].Domain
RA [auth NJ]PF05843Suppressor of forked protein (Suf) (Suf)Suppressor of forked protein (Suf)- Repeat
SA [auth NK]PF17903Krr1 KH1 domain (KH_8)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1].Domain
SA [auth NK]PF21800KRR1 small subunit processome component, second KH domain (KRR1-like_KH2)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences.Domain
TA [auth SA]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
TA [auth SA]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
UA [auth SB]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
VA [auth SC],
WA [auth SD]
PF01269Fibrillarin (Fibrillarin)Fibrillarin- Domain
XA [auth SE],
YA [auth SF]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
ZA [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth L4]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth L4]PF00467KOW motif (KOW)KOW motif- Family
AB [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
AB [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
BB [auth SI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1].Domain
BB [auth SI]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
CB [auth SJ],
DB [auth SK]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
EB [auth SL]PF04900Fcf1 (Fcf1)Fcf1- Family
FB [auth SM]PF04427Brix domain (Brix)Brix domain- Domain
GB [auth SN]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
HB [auth SO]PF22891Eukaryotic type KH-domain (KH-domain type I) (327.11.2) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I) (327.11.2)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit.Domain
F [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
MB [auth ST]PF04147Nop14-like family (Nop14)Nop14-like family- Family
NB [auth SU]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
QB [auth SY]PF03998Utp11 protein (Utp11)Utp11 protein- Family
G [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
I [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L0]5' ETS---
J [auth L9]rpS9_uS4
K [auth LC]rpS16_uS9
L [auth LD]rpS11_uS17
M [auth LE]rpS22_uS8
N [auth LF]rpS24_eS24
O [auth LG]rpS28_eS28
P [auth LH]Utp17
Q [auth LI]Utp8
R [auth LJ]Utp15
S [auth LK]Utp9
B [auth L1]18S pre-rRNA---
T [auth LL]Utp5-
U [auth LM]Utp10
V [auth LN]Utp4
W [auth LO]Utp1
X [auth LP]Utp6
Y [auth LQ]Utp12
Z [auth LR]Utp13
AA [auth LS]Utp18-
BA [auth LT]Utp21-
CA [auth LU]Sof1
C [auth L2]U3 snoRNA---
DA [auth LV]Enp2-
EA [auth LW]Utp7-
FA [auth LX],
GA [auth LY]
Kre33
HA [auth LZ]Imp3
IA [auth NA]Mpp10
JA [auth NB]Sas10
KA [auth NC]Lcp5-
LA [auth ND]Bud21
MA [auth NE]Faf1-
NA [auth NF]rpS13_uS15
D [auth L3]rpS18_uS13
OA [auth NG]rpS14_uS11
PA [auth NH]Utp22
QA [auth NI]Rrp7
RA [auth NJ]Rrp5
SA [auth NK]Krr1
TA [auth SA]Nop56
UA [auth SB]Nop58
VA [auth SC],
WA [auth SD]
Nop1
XA [auth SE],
YA [auth SF]
Snu13
ZA [auth SG]Rrp9
E [auth L4]rpS4_eS4
AB [auth SH]Rcl1
BB [auth SI]Bms1
CB [auth SJ],
DB [auth SK]
Emg1
EB [auth SL]Utp24
FB [auth SM]Imp4
GB [auth SN]Utp30
HB [auth SO]Pno1
IB [auth SP]Utp20---
JB [auth SQ]Fcf2
KB [auth SR]rpS23_uS12
F [auth L5]rpS5_uS7
LB [auth SS]Utp14
MB [auth ST]Nop14
NB [auth SU]Noc4-
OB [auth SV]Rrt14- -
PB [auth SX]Unassigned peptides---
QB [auth SY]Utp11-
RB [auth SZ]Enp1
G [auth L6]rpS6_eS6
H [auth L7]rpS7_eS7
I [auth L8]rpS8_eS8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth L9]IPR002942RNA-binding S4 domainDomain
J [auth L9]IPR022801Small ribosomal subunit protein uS4Family
J [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
K [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth LC]IPR000754Small ribosomal subunit protein uS9Family
K [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth LD]IPR000266Small ribosomal subunit protein uS17Family
L [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
M [auth LE]IPR000630Small ribosomal subunit protein uS8Family
M [auth LE]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
M [auth LE]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
N [auth LF]IPR001976Small ribosomal subunit protein eS24Family
N [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
O [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
O [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth LG]IPR000289Small ribosomal subunit protein eS28Family
P [auth LH]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
P [auth LH]IPR001680WD40 repeatRepeat
P [auth LH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth LI]IPR018843Utp8, beta-propellerDomain
R [auth LJ]IPR019775WD40 repeat, conserved siteConserved Site
R [auth LJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR001680WD40 repeatRepeat
R [auth LJ]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
R [auth LJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth LK]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
T [auth LL]IPR007148Small-subunit processome, Utp12Domain
T [auth LL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
T [auth LL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth LM]IPR016024Armadillo-type foldHomologous Superfamily
U [auth LM]IPR040191U3 small nucleolar RNA-associated protein 10Family
U [auth LM]IPR021133HEAT, type 2Repeat
U [auth LM]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth LM]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
U [auth LM]IPR012954BP28, C-terminal domainDomain
V [auth LN]IPR001680WD40 repeatRepeat
V [auth LN]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth LN]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
W [auth LO]IPR019775WD40 repeat, conserved siteConserved Site
W [auth LO]IPR007148Small-subunit processome, Utp12Domain
W [auth LO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
W [auth LO]IPR001680WD40 repeatRepeat
W [auth LO]IPR020472G-protein beta WD-40 repeatRepeat
W [auth LO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR027145Periodic tryptophan protein 2Family
X [auth LP]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth LP]IPR003107HAT (Half-A-TPR) repeatRepeat
X [auth LP]IPR013949U3 small nucleolar RNA-associated protein 6Family
Y [auth LQ]IPR019775WD40 repeat, conserved siteConserved Site
Y [auth LQ]IPR007148Small-subunit processome, Utp12Domain
Y [auth LQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth LQ]IPR001680WD40 repeatRepeat
Y [auth LQ]IPR020472G-protein beta WD-40 repeatRepeat
Y [auth LQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth LR]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
Z [auth LR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR001680WD40 repeatRepeat
Z [auth LR]IPR020472G-protein beta WD-40 repeatRepeat
Z [auth LR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR001680WD40 repeatRepeat
AA [auth LS]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR045161U3 small nucleolar RNA-associated protein 18Family
BA [auth LT]IPR007319Small-subunit processome, Utp21Domain
BA [auth LT]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
BA [auth LT]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth LT]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth LT]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
BA [auth LT]IPR001680WD40 repeatRepeat
BA [auth LT]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR001680WD40 repeatRepeat
CA [auth LU]IPR007287Sof1-like proteinDomain
CA [auth LU]IPR020472G-protein beta WD-40 repeatRepeat
CA [auth LU]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth LV]IPR001680WD40 repeatRepeat
DA [auth LV]IPR040382Nucleolar protein 10/Enp2Family
DA [auth LV]IPR012580NUC153Domain
DA [auth LV]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth LV]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth LW]IPR019775WD40 repeat, conserved siteConserved Site
EA [auth LW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth LW]IPR012952BING4, C-terminal domainDomain
EA [auth LW]IPR001680WD40 repeatRepeat
EA [auth LW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth LW]IPR040315WD repeat-containing protein WDR46/Utp7Family
FA [auth LX],
GA [auth LY]
IPR027992Possible tRNA binding domainDomain
FA [auth LX],
GA [auth LY]
IPR032672TmcA/NAT10/Kre33Family
FA [auth LX],
GA [auth LY]
IPR013562tRNA(Met) cytidine acetyltransferase TmcA, N-terminalDomain
FA [auth LX],
GA [auth LY]
IPR033688RNA cytidine acetyltransferase NAT10Family
FA [auth LX],
GA [auth LY]
IPR000182GNAT domainDomain
FA [auth LX],
GA [auth LY]
IPR007807Helicase domainDomain
FA [auth LX],
GA [auth LY]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HA [auth LZ]IPR002942RNA-binding S4 domainDomain
HA [auth LZ]IPR022801Small ribosomal subunit protein uS4Family
HA [auth LZ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HA [auth LZ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IA [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
JA [auth NB]IPR018972Sas10 C-terminal domainDomain
JA [auth NB]IPR007146Sas10/Utp3/C1DFamily
KA [auth NC]IPR007146Sas10/Utp3/C1DFamily
LA [auth ND]IPR013268U3 small nucleolar RNA-associated protein 16Family
NA [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
NA [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
NA [auth NF]IPR000589Small ribosomal subunit protein uS15Family
NA [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
D [auth L3]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
D [auth L3]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
D [auth L3]IPR001892Small ribosomal subunit protein uS13Family
D [auth L3]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
OA [auth NG]IPR001971Small ribosomal subunit protein uS11Family
OA [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
OA [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth NH]IPR035367Nrap protein, domain 2Domain
PA [auth NH]IPR035368Nrap protein, domain 3Domain
PA [auth NH]IPR035370Nrap protein, domain 5Domain
PA [auth NH]IPR005554NOL6/Upt22Family
PA [auth NH]IPR035369Nrap protein, domain 4Domain
PA [auth NH]IPR035082Nrap protein domain 1Domain
PA [auth NH]IPR035371Nrap protein, domain 6Domain
QA [auth NI]IPR040446Ribosomal RNA-processing protein 7Family
QA [auth NI]IPR040447Rrp7, RRM-like N-terminal domainDomain
QA [auth NI]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
RA [auth NJ]IPR048059rRNA biogenesis protein RRP5, S1 domain, first repeatDomain
RA [auth NJ]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
RA [auth NJ]IPR003029S1 domainDomain
RA [auth NJ]IPR048058rRNA biogenesis protein RRP5, S1 domain, eleventh repeatDomain
RA [auth NJ]IPR003107HAT (Half-A-TPR) repeatRepeat
RA [auth NJ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RA [auth NJ]IPR045209rRNA biogenesis protein Rrp5Family
SA [auth NK]IPR004087K Homology domainDomain
SA [auth NK]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
SA [auth NK]IPR041174KRR1 small subunit processome component, first KH domainDomain
SA [auth NK]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
SA [auth NK]IPR048548KRR1 small subunit processome component, second KH domainDomain
SA [auth NK]IPR024166Ribosomal RNA assembly KRR1Family
SA [auth NK]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
TA [auth SA]IPR042239Nop, C-terminal domainHomologous Superfamily
TA [auth SA]IPR012974Nucleolar protein 58/56, N-terminalDomain
TA [auth SA]IPR002687Nop domainDomain
TA [auth SA]IPR012976NOSICDomain
TA [auth SA]IPR036070Nop domain superfamilyHomologous Superfamily
TA [auth SA]IPR045056Nucleolar protein Nop56/Nop58Family
UA [auth SB]IPR042239Nop, C-terminal domainHomologous Superfamily
UA [auth SB]IPR012974Nucleolar protein 58/56, N-terminalDomain
UA [auth SB]IPR002687Nop domainDomain
UA [auth SB]IPR012976NOSICDomain
UA [auth SB]IPR036070Nop domain superfamilyHomologous Superfamily
UA [auth SB]IPR045056Nucleolar protein Nop56/Nop58Family
VA [auth SC],
WA [auth SD]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
VA [auth SC],
WA [auth SD]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
VA [auth SC],
WA [auth SD]
IPR020813Fibrillarin, conserved siteConserved Site
XA [auth SE],
YA [auth SF]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
XA [auth SE],
YA [auth SF]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
XA [auth SE],
YA [auth SF]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
XA [auth SE],
YA [auth SF]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
XA [auth SE],
YA [auth SF]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
ZA [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ZA [auth SG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
ZA [auth SG]IPR001680WD40 repeatRepeat
ZA [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth L4]IPR002942RNA-binding S4 domainDomain
E [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth L4]IPR000876Small ribosomal subunit protein eS4Family
E [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth L4]IPR005824KOWDomain
AB [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
AB [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
AB [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
AB [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
AB [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
AB [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
AB [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
AB [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
BB [auth SI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
BB [auth SI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
BB [auth SI]IPR003959ATPase, AAA-type, coreDomain
BB [auth SI]IPR012948AARP2CNDomain
BB [auth SI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BB [auth SI]IPR030387Bms1/Tsr1-type G domainDomain
BB [auth SI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
CB [auth SJ],
DB [auth SK]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
CB [auth SJ],
DB [auth SK]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
CB [auth SJ],
DB [auth SK]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
EB [auth SL]IPR002716PIN domainDomain
EB [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
EB [auth SL]IPR006984rRNA-processing protein Fcf1/Utp23Family
EB [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
FB [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
FB [auth SM]IPR007109Brix domainDomain
GB [auth SN]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
GB [auth SN]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
HB [auth SO]IPR041174KRR1 small subunit processome component, first KH domainDomain
HB [auth SO]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
JB [auth SQ]IPR039883Fcf2/DNTTIP2Family
JB [auth SQ]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
KB [auth SR]IPR006032Small ribosomal subunit protein uS12Family
KB [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KB [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
F [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth L5]IPR000235Small ribosomal subunit protein uS7Family
F [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
LB [auth SS]IPR006709Small-subunit processome, Utp14Family
MB [auth ST]IPR007276Nucleolar protein 14Family
NB [auth SU]IPR027193Nucleolar complex protein 4Family
NB [auth SU]IPR005612CCAAT-binding factorDomain
OB [auth SV]IPR031404Regulator of rDNA transcription 14Family
OB [auth SV]IPR031404Regulator of rDNA transcription 14Family
QB [auth SY]IPR007144Small-subunit processome, Utp11Family
RB [auth SZ]IPR007955BystinFamily
G [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth L6]IPR001377Small ribosomal subunit protein eS6Family
G [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth L7]IPR000554Small ribosomal subunit protein eS7Family
H [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth L8]IPR001047Small ribosomal subunit protein eS8Family
I [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site