5UHI | pdb_00005uhi

Structure of RORgt bound to

• PDB DOI: https://doi.org/10.2210/pdb5UHI/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-01-11 Released: 2017-04-05 
• Deposition Author(s): Spurlino, J., Abad, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free: 
  0.318 (Depositor), 0.284 (DCC) 
• R-Value Work: 
  0.257 (Depositor) 
• R-Value Observed: 
  0.263 (Depositor) 

Literature

Identification and structure activity relationships of quinoline tertiary alcohol modulators of ROR gamma t.

Kummer, D.A., Cummings, M.D., Abad, M., Barbay, J., Castro, G., Wolin, R., Kreutter, K.D., Maharoof, U., Milligan, C., Nishimura, R., Pierce, J., Schalk-Hihi, C., Spurlino, J., Urbanski, M., Venkatesan, H., Wang, A., Woods, C., Xue, X., Edwards, J.P., Fourie, A.M., Leonard, K.

(2017) Bioorg Med Chem Lett 27: 2047-2057

• PubMed: 28318945 
• DOI: https://doi.org/10.1016/j.bmcl.2017.02.044
• Primary Citation Related Structures: 
  5UFO, 5UFR, 5UHI


• PubMed Abstract: 
  

  A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORγt) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions of the quinoline core using structure-activity relationships and structure-based drug design methods led to the discovery of a series of modulators with improved RORγt inhibitory potency and inverse agonism properties.

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Organizational Affiliation: 
• Discovery Immunology, Janssen Research and Development, 3210 Merryfield Row, San Diego, CA 92121, United States. Electronic address: [e-mail].
Discovery Sciences, Janssen Research and Development, Welsh and McKean Roads, Spring House, PA 19477, United States. Electronic address: [e-mail].
Discovery Sciences, Janssen Research and Development, Welsh and McKean Roads, Spring House, PA 19477, United States.
Discovery Immunology, Janssen Research and Development, Welsh and McKean Roads, Spring House, PA 19477, United States.
Discovery Immunology, Janssen Research and Development, 3210 Merryfield Row, San Diego, CA 92121, United States.
Discovery Immunology, Janssen Research and Development, Welsh and McKean Roads, Spring House, PA 19477, United States. Electronic address: [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 61.35 kDa 
• Atom Count: 3,708 
• Modeled Residue Count: 446 
• Deposited Residue Count: 516 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear receptor ROR-gamma	A, B	258	Homo sapiens	Mutation(s): 0  Gene Names: RORC, NR1F3, RORG, RZRG
UniProt & NIH Common Fund Data Resources
Find proteins for P51449 (Homo sapiens) Explore P51449  Go to UniProtKB:  P51449
PHAROS:  P51449 GTEx:  ENSG00000143365

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
8A4	C [auth A], D [auth B]	(R)-(4-chloro-2-methoxy-3-{[4-(1H-pyrazol-1-yl)phenyl]methyl}quinolin-6-yl)(4-chlorophenyl)(1-methyl-1H-imidazol-5-yl)methanol C31 H25 Cl2 N5 O2 UWOBQISTECYGOP-WJOKGBTCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free:  0.318 (Depositor), 0.284 (DCC) 
• R-Value Work:  0.257 (Depositor) 
• R-Value Observed: 0.263 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.35	α = 90
b = 104.323	β = 90
c = 123.577	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-04-05 
Deposition Author(s): Spurlino, J., Abad, M.

Revision History  

• Version 1.0: 2017-04-05
  Type: Initial release
  
• Version 1.1: 2017-04-26
  Changes: Database references
• Version 1.2: 2024-03-06
  Changes: Data collection, Database references