5UFR

Structure of RORgt bound to

PDB DOI: https://doi.org/10.2210/pdb5UFR/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-01-05 Released: 2017-04-05
Deposition Author(s): Spurlino, J., Abad, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free: 0.254
R-Value Work: 0.217
R-Value Observed: 0.219

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Identification and structure activity relationships of quinoline tertiary alcohol modulators of ROR gamma t.

Kummer, D.A., Cummings, M.D., Abad, M., Barbay, J., Castro, G., Wolin, R., Kreutter, K.D., Maharoof, U., Milligan, C., Nishimura, R., Pierce, J., Schalk-Hihi, C., Spurlino, J., Urbanski, M., Venkatesan, H., Wang, A., Woods, C., Xue, X., Edwards, J.P., Fourie, A.M., Leonard, K.

(2017) Bioorg Med Chem Lett 27: 2047-2057

PubMed: 28318945 Search on PubMed
DOI: https://doi.org/10.1016/j.bmcl.2017.02.044
Primary Citation of Related Structures:
5UFO, 5UFR, 5UHI

PubMed Abstract:
A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORγt) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions of the quinoline core using structure-activity relationships and structure-based drug design methods led to the discovery of a series of modulators with improved RORγt inhibitory potency and inverse agonism properties.

Organizational Affiliation

Discovery Immunology, Janssen Research and Development, 3210 Merryfield Row, San Diego, CA 92121, United States. Electronic address: dkummer1@its.jnj.com.

Macromolecule Content

Total Structure Weight: 61.15 kDa
Atom Count: 3,713
Modelled Residue Count: 446
Deposited Residue Count: 516
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear receptor ROR-gamma	A, B	258	Homo sapiens	Mutation(s): 0 Gene Names: RORC, NR1F3, RORG, RZRG
UniProt & NIH Common Fund Data Resources
Find proteins for P51449 (Homo sapiens) Explore P51449 Go to UniProtKB: P51449
PHAROS: P51449 GTEx: ENSG00000143365
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P51449
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
88J Query on 88J Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	(S)-[4-chloro-2-(dimethylamino)-3-phenylquinolin-6-yl](1-methyl-1H-imidazol-5-yl)(pyridin-4-yl)methanol C₂₇ H₂₄ Cl N₅ O SEJAMGYPDDPTHR-HHHXNRCGSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B]