5J6P | pdb_00005j6p

Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe

PDB DOI: https://doi.org/10.2210/pdb5J6P/pdb

Classification: CELL CYCLE
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-04-05 Released: 2017-11-01
Deposition Author(s): Wang, C., Shao, C., Zhang, M., Zhang, X., Zang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.294 (Depositor), 0.324 (DCC)
R-Value Work:
0.225 (Depositor), 0.267 (DCC)
R-Value Observed:
0.228 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe

Shao, C., Wang, C., Zhang, M., Zhang, X., Zang, J.

To be published.

Macromolecule Content

Total Structure Weight: 38.58 kDa
Atom Count: 2,431
Modeled Residue Count: 302
Deposited Residue Count: 330
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kinetochore protein mis18	A [auth B], B [auth A], C	110	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: mis18, SPCC970.12
UniProt
Find proteins for Q9P802 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9P802 Go to UniProtKB: Q9P802
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9P802
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain E [auth A] SDF format, chain F [auth C] MOL2 format, chain D [auth B] MOL2 format, chain E [auth A] MOL2 format, chain F [auth C] mmCIF format, chain D [auth B] mmCIF format, chain E [auth A] mmCIF format, chain F [auth C]	D [auth B], E [auth A], F [auth C]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Focus chain E [auth A] Focus chain F [auth C] Interactions & Density Focus chain D [auth B] Focus chain E [auth A] Focus chain F [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.294 (Depositor), 0.324 (DCC)
R-Value Work: 0.225 (Depositor), 0.267 (DCC)
R-Value Observed: 0.228 (Depositor)

Space Group: P 3₁ 1 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.568	α = 90
b = 120.568	β = 90
c = 73.702	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data processing
SCALA	data scaling
PHENIX	phasing
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-11-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-11-01
Type: Initial release
Version 1.1: 2017-11-08
Changes: Derived calculations
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.