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Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 0.2M (NH4)2SO4, 20% PEG 3350, 0.4M 1,6-Hexanediol, 0.1M Tris pH 8.5, 4% Dioxane
Crystal Properties Matthews coefficient Solvent content 4.17 70.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.568 α = 90 b = 120.568 β = 90 c = 73.702 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97915 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 60.39 99.8 0.095 14.9 10.6 18911
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.506 4.8 10.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 46.66 17884 971 99.32 0.22849 0.22518 0.2671 0.29436 0.3243 RANDOM 85.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.21 1.6 3.21 -10.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.495 r_dihedral_angle_4_deg 23.575 r_dihedral_angle_3_deg 20.26 r_long_range_B_refined 12.071 r_long_range_B_other 12.069 r_scangle_other 9.991 r_mcangle_it 9.149 r_mcangle_other 9.146 r_dihedral_angle_1_deg 8.58 r_scbond_it 6.929
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.495 r_dihedral_angle_4_deg 23.575 r_dihedral_angle_3_deg 20.26 r_long_range_B_refined 12.071 r_long_range_B_other 12.069 r_scangle_other 9.991 r_mcangle_it 9.149 r_mcangle_other 9.146 r_dihedral_angle_1_deg 8.58 r_scbond_it 6.929 r_scbond_other 6.927 r_mcbond_it 6.479 r_mcbond_other 6.471 r_angle_refined_deg 2.02 r_angle_other_deg 1.17 r_chiral_restr 0.111 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2425 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement iMOSFLM data processing SCALA data scaling PHENIX phasing Coot model building