5HS5 | pdb_00005hs5

Crystal structure of Staphylococcus aureus SarX

PDB DOI: https://doi.org/10.2210/pdb5HS5/pdb

Classification: TRANSCRIPTIONAL REGULATOR
Organism(s): Staphylococcus aureus subsp. aureus USA300
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-01-25 Released: 2017-02-08
Deposition Author(s): Zhang, F., Song, Y., Li, X., Teng, M.K.
Funding Organization(s): the Chinese Ministry of Science and Technology, the Chinese National Natural Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free:
0.281 (Depositor), 0.290 (DCC)
R-Value Work:
0.228 (Depositor), 0.236 (DCC)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Staphylococcus aureus SarX

Zhang, F., Song, Y., Li, X., Teng, M.K.

To be published.

Macromolecule Content

Total Structure Weight: 29.39 kDa
Atom Count: 1,834
Modeled Residue Count: 232
Deposited Residue Count: 242
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HTH-type transcriptional regulator SarX	A, B	121	Staphylococcus aureus subsp. aureus USA300	Mutation(s): 0 Gene Names: sarX, SAUSA300_0654
UniProt
Find proteins for Q2G0D1 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2G0D1 Go to UniProtKB: Q2G0D1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2G0D1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free: 0.281 (Depositor), 0.290 (DCC)
R-Value Work: 0.228 (Depositor), 0.236 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.17	α = 90
b = 56.17	β = 90
c = 153.1	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
Coot	model building
PHENIX	phasing
iMOSFLM	data processing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-02-08

Deposition Author(s):

Funding Organization	Location	Grant Number
the Chinese Ministry of Science and Technology	China	2012CB917200 and 2009CB825500
the Chinese National Natural Science Foundation	China	31270014, 31130018, 30900224 and 10979039

Revision History (Full details and data files)

Version 1.0: 2017-02-08
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.