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Crystal structure of Staphylococcus aureus SarX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 289 0.01 M Iron (III) chloride hexahydrate, 0.1 M Sodium citrate tribasic dihydrate,10%(v/v) Jeffamine M-600
Crystal Properties Matthews coefficient Solvent content 2.52 51.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.17 α = 90 b = 56.17 β = 90 c = 153.1 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9791 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 99.2 19.7 15.1 9620
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.69 99.6 0.451 5.8 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.55 46.4 9038 545 99.07 0.23121 0.22822 0.2356 0.28118 0.2905 RANDOM 50.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.65 0.65 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.753 r_dihedral_angle_3_deg 18.489 r_dihedral_angle_4_deg 17.781 r_long_range_B_other 9.067 r_long_range_B_refined 9.066 r_scangle_other 7.185 r_dihedral_angle_1_deg 6.007 r_mcangle_it 5.694 r_mcangle_other 5.693 r_scbond_it 4.505
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.753 r_dihedral_angle_3_deg 18.489 r_dihedral_angle_4_deg 17.781 r_long_range_B_other 9.067 r_long_range_B_refined 9.066 r_scangle_other 7.185 r_dihedral_angle_1_deg 6.007 r_mcangle_it 5.694 r_mcangle_other 5.693 r_scbond_it 4.505 r_scbond_other 4.503 r_mcbond_it 3.752 r_mcbond_other 3.745 r_angle_other_deg 3.703 r_angle_refined_deg 1.558 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_other 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1818 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Coot model building PHENIX phasing iMOSFLM data processing