5C70

The structure of Aspergillus oryzae beta-glucuronidase

PDB DOI: https://doi.org/10.2210/pdb5C70/pdb

Classification: HYDROLASE
Organism(s): Aspergillus oryzae
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2015-06-24 Released: 2016-06-15
Deposition Author(s): Sun, H.L., Lv, B., Huang, S., Sun, Q.F., Li, C., Jiang, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.254
R-Value Work: 0.198
R-Value Observed: 0.200

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Enhancing the Thermostability of beta-Glucuronidase by Rationally Redesigning the Catalytic Domain Based on Sequence Alignment Strategy

Feng, X.D., Tang, H., Han, B.J., Lv, B., Li, C.

(2016) Ind Eng Chem Res 55: 5474-5483

DOI: https://doi.org/10.1021/acs.iecr.6b00535

Macromolecule Content

Total Structure Weight: 136.96 kDa
Atom Count: 9,320
Modelled Residue Count: 1,172
Deposited Residue Count: 1,224
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucuronidase	A, B	612	Aspergillus oryzae	Mutation(s): 0 Gene Names: Pgus EC: 3.2.1.25 (PDB Primary Data), 3.2.1.31 (UniProt)
UniProt
Find proteins for A7XS03 (Aspergillus oryzae) Explore A7XS03 Go to UniProtKB: A7XS03
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A7XS03
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.254
R-Value Work: 0.198
R-Value Observed: 0.200
Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.32	α = 90
b = 110.32	β = 90
c = 480.722	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data processing
HKL-2000	data scaling
AMoRE	phasing
REFMAC	refinement
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-06-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-06-15
Type: Initial release
Version 1.1: 2023-03-01
Changes: Database references, Derived calculations, Structure summary
Version 1.2: 2024-05-29
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.