☰ Navigation Tabs
The structure of Aspergillus oryzae beta-glucuronidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 289 1 M Succinic acid
Crystal Properties Matthews coefficient Solvent content 2.96 58.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.32 α = 90 b = 110.32 β = 90 c = 480.722 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.29996 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 100 0.191 17.59 12.8 32783
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 99.9 0.471 12.7 3155
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 30 30703 1641 99.09 0.2003 0.1976 0.209 0.2536 0.2599 RANDOM 46.653
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.01 1.01 2.01 -3.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.707 r_dihedral_angle_4_deg 22.437 r_dihedral_angle_3_deg 21.424 r_dihedral_angle_1_deg 8.199 r_scangle_it 2.938 r_scbond_it 1.689 r_angle_refined_deg 1.414 r_mcangle_it 1.266 r_mcbond_it 0.654 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.707 r_dihedral_angle_4_deg 22.437 r_dihedral_angle_3_deg 21.424 r_dihedral_angle_1_deg 8.199 r_scangle_it 2.938 r_scbond_it 1.689 r_angle_refined_deg 1.414 r_mcangle_it 1.266 r_mcbond_it 0.654 r_chiral_restr 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9320 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data processing HKL-2000 data scaling AMoRE phasing REFMAC refinement Coot model building