Download MendeleyHuman Tankyrase-2 in Complex with Extended Stapled Peptide sp4n2m3
Xu, W., Lau, Y.H., Fischer, G., Chattopadhyay, A., Tan, Y.S., Verma, C., Hyvonen, M., Spring, D.S., Itzhaki, L.S.To be published.
5BXO
Human Tankyrase-2 in Complex with Macrocyclised Extended Peptide cp4n2m3
- PDB DOI: https://doi.org/10.2210/pdb5BXO/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-06-09 Released: 2016-06-29
- Funding Organization(s): Medical Research Council (United Kingdom)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.33 Å
- R-Value Free: 0.203
- R-Value Work: 0.175
- R-Value Observed: 0.176
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tankyrase-2 | 164 | Homo sapiens | Mutation(s): 0 Gene Names: TNKS2, PARP5B, TANK2, TNKL EC: 2.4.2.30 (PDB Primary Data), 2.4.2 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9H2K2 (Homo sapiens) Explore Q9H2K2 Go to UniProtKB: Q9H2K2 | |||||
PHAROS: Q9H2K2 GTEx: ENSG00000107854 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9H2K2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tankyrase-2 | 10 | Homo sapiens | Mutation(s): 0 EC: 2.4.2.30 (PDB Primary Data), 2.4.2 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9H2K2 (Homo sapiens) Explore Q9H2K2 Go to UniProtKB: Q9H2K2 | |||||
PHAROS: Q9H2K2 GTEx: ENSG00000107854 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9H2K2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 4XP Query on 4XP | N [auth C], O [auth D] | 4,4'-propane-1,3-diylbis(1-methyl-1H-1,2,3-triazole) C9 H14 N6 NXBVOKRBXODKCH-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A] F [auth A] G [auth A] I [auth B] J [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| DMS Query on DMS | H [auth A], L [auth B], M [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.33 Å
- R-Value Free: 0.203
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 29.823 | α = 78.45 |
| b = 46.014 | β = 88.99 |
| c = 54.472 | γ = 72.35 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Aimless | data scaling |
| PHASER | phasing |
| Coot | model building |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-06-29 Deposition Author(s): Xu, W., Fischer, G., Hyvonen, M., Itzhaki, L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Medical Research Council (United Kingdom) | United Kingdom | G1002329 |
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2017-09-13
Changes: Advisory, Author supporting evidence - Version 1.2: 2024-10-23
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary
