4OG1 | pdb_00004og1

Crystal Structure of a Putative Enoyl-CoA Hydratase from Novosphingobium aromaticivorans DSM 12444

PDB DOI: https://doi.org/10.2210/pdb4OG1/pdb

Classification: LYASE
Organism(s): Novosphingobium aromaticivorans DSM 12444
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-01-15 Released: 2014-01-29
Deposition Author(s): Chapman, H.C., Cooper, D.R., Tkaczuk, K.L., Cymborowski, M.T., Stead, M., Hillerich, B., Ahmed, M., Bonanno, J.B., Seidel, R., Alkire, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.197 (Depositor), 0.208 (DCC)
R-Value Work:
0.167 (Depositor), 0.177 (DCC)
R-Value Observed:
0.168 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of a Putative Enoyl-CoA Hydratase from Novosphingobium aromaticivorans DSM 12444

Chapman, H.C., Cooper, D.R., Tkaczuk, K.L., Cymborowski, M.T., Stead, M., Hillerich, B., Ahmed, M., Bonanno, J.B., Seidel, R., Alkire, R., Almo, S.C., Minor, W.

To be published.

Macromolecule Content

Total Structure Weight: 32.13 kDa
Atom Count: 2,099
Modeled Residue Count: 257
Deposited Residue Count: 290
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/isomerase	A	290	Novosphingobium aromaticivorans DSM 12444	Mutation(s): 0 Gene Names: Saro_0502 EC: 4.2.1.17
UniProt
Find proteins for Q2GB23 (Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199)) Explore Q2GB23 Go to UniProtKB: Q2GB23
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2GB23
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PE8 Query on PE8 Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL C₁₆ H₃₄ O₉ GLZWNFNQMJAZGY-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.197 (Depositor), 0.208 (DCC)
R-Value Work: 0.167 (Depositor), 0.177 (DCC)
R-Value Observed: 0.168 (Depositor)

Diffraction Data:

Space Group: P 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.587	α = 90
b = 108.587	β = 90
c = 108.587	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
SHELXS	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-01-29

Deposition Author(s):

New York Structural Genomics Research Consortium (NYSGRC)

Revision History (Full details and data files)

Version 1.0: 2014-01-29
Type: Initial release
Version 1.1: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
Version 1.2: 2024-02-28
Changes: Data collection