4OG1 | pdb_00004og1

Crystal Structure of a Putative Enoyl-CoA Hydratase from Novosphingobium aromaticivorans DSM 12444

• PDB DOI: https://doi.org/10.2210/pdb4OG1/pdb

• Classification: LYASE
• Organism(s): Novosphingobium aromaticivorans DSM 12444
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-01-15 Released: 2014-01-29 
• Deposition Author(s): Chapman, H.C., Cooper, D.R., Tkaczuk, K.L., Cymborowski, M.T., Stead, M., Hillerich, B., Ahmed, M., Bonanno, J.B., Seidel, R., Alkire, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.197 (Depositor), 0.208 (DCC) 
• R-Value Work: 
  0.167 (Depositor), 0.177 (DCC) 
• R-Value Observed: 
  0.168 (Depositor) 

Literature

Crystal Structure of a Putative Enoyl-CoA Hydratase from Novosphingobium aromaticivorans DSM 12444

Chapman, H.C., Cooper, D.R., Tkaczuk, K.L., Cymborowski, M.T., Stead, M., Hillerich, B., Ahmed, M., Bonanno, J.B., Seidel, R., Alkire, R., Almo, S.C., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 32.13 kDa 
• Atom Count: 2,099 
• Modeled Residue Count: 257 
• Deposited Residue Count: 290 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/isomerase	A	290	Novosphingobium aromaticivorans DSM 12444	Mutation(s): 0  Gene Names: Saro_0502 EC: 4.2.1.17
UniProt
Find proteins for Q2GB23 (Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199)) Explore Q2GB23  Go to UniProtKB:  Q2GB23

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PE8	B [auth A]	3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL C16 H34 O9 GLZWNFNQMJAZGY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.197 (Depositor), 0.208 (DCC) 
• R-Value Work:  0.167 (Depositor), 0.177 (DCC) 
• R-Value Observed: 0.168 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M3HP40

Space Group: P 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.587	α = 90
b = 108.587	β = 90
c = 108.587	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
SHELXS	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-01-29 
Deposition Author(s): Chapman, H.C., Cooper, D.R., Tkaczuk, K.L., Cymborowski, M.T., Stead, M., Hillerich, B., Ahmed, M., Bonanno, J.B., Seidel, R., Alkire, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History  

• Version 1.0: 2014-01-29
  Type: Initial release
  
• Version 1.1: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.2: 2024-02-28
  Changes: Data collection