4OG1

Crystal Structure of a Putative Enoyl-CoA Hydratase from Novosphingobium aromaticivorans DSM 12444


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72890.2 M Potassium Sulfate, 20% (w/v) PEG 3350, Equilibrated against reservoir of 1.5M NaCl , pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
3.3663.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.587α = 90
b = 108.587β = 90
c = 108.587γ = 90
Symmetry
Space GroupP 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2013-11-11MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97936APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.05509926899
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.09999.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.0550253121341990.168130.166640.19652RANDOM50.159
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.184
r_dihedral_angle_4_deg18.047
r_dihedral_angle_3_deg15.135
r_long_range_B_refined8.625
r_long_range_B_other8.593
r_dihedral_angle_1_deg6.461
r_scangle_other5.156
r_scbond_it3.664
r_scbond_other3.615
r_mcangle_it2.825
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.184
r_dihedral_angle_4_deg18.047
r_dihedral_angle_3_deg15.135
r_long_range_B_refined8.625
r_long_range_B_other8.593
r_dihedral_angle_1_deg6.461
r_scangle_other5.156
r_scbond_it3.664
r_scbond_other3.615
r_mcangle_it2.825
r_mcangle_other2.825
r_mcbond_other2.156
r_mcbond_it2.155
r_angle_refined_deg1.982
r_angle_other_deg0.928
r_chiral_restr0.118
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1948
Nucleic Acid Atoms
Solvent Atoms118
Heterogen Atoms25

Software

Software
Software NamePurpose
HKL-3000data collection
SHELXSphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling