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Crystal Structure of a Putative Enoyl-CoA Hydratase from Novosphingobium aromaticivorans DSM 12444
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 0.2 M Potassium Sulfate, 20% (w/v) PEG 3350, Equilibrated against reservoir of 1.5M NaCl , pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.36 63.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.587 α = 90 b = 108.587 β = 90 c = 108.587 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2013-11-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97936 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 99 26899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 99 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 50 25312 1341 99 0.16813 0.16664 0.1771 0.19652 0.208 RANDOM 50.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.184 r_dihedral_angle_4_deg 18.047 r_dihedral_angle_3_deg 15.135 r_long_range_B_refined 8.625 r_long_range_B_other 8.593 r_dihedral_angle_1_deg 6.461 r_scangle_other 5.156 r_scbond_it 3.664 r_scbond_other 3.615 r_mcangle_it 2.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.184 r_dihedral_angle_4_deg 18.047 r_dihedral_angle_3_deg 15.135 r_long_range_B_refined 8.625 r_long_range_B_other 8.593 r_dihedral_angle_1_deg 6.461 r_scangle_other 5.156 r_scbond_it 3.664 r_scbond_other 3.615 r_mcangle_it 2.825 r_mcangle_other 2.825 r_mcbond_other 2.156 r_mcbond_it 2.155 r_angle_refined_deg 1.982 r_angle_other_deg 0.928 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1948 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 25
Software Software Software Name Purpose HKL-3000 data collection SHELXS phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling