4B2T

The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.50 Å
  • R-Value Free: 0.399 
  • R-Value Work: 0.340 
  • R-Value Observed: 0.340 

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This is version 1.5 of the entry. See complete history

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 2XSM


Literature

The Crystal Structures of the Eukaryotic Chaperonin Cct Reveal its Functional Partitioning

Kalisman, N.Schroder, G.F.Levitt, M.

(2013) Structure 21: 540

  • DOI: https://doi.org/10.1016/j.str.2013.01.017
  • Primary Citation of Related Structures:  
    4B2T, 4V8R

  • PubMed Abstract: 

    In eukaryotes, CCT is essential for the correct and efficient folding of many cytosolic proteins, most notably actin and tubulin. Structural studies of CCT have been hindered by the failure of standard crystallographic analysis to resolve its eight different subunit types at low resolutions. Here, we exhaustively assess the R value fit of all possible CCT models to available crystallographic data of the closed and open forms with resolutions of 3.8 Å and 5.5 Å, respectively. This unbiased analysis finds the native subunit arrangements with overwhelming significance. The resulting structures provide independent crystallographic proof of the subunit arrangement of CCT and map major asymmetrical features of the particle onto specific subunits. The actin and tubulin substrates both bind around subunit CCT6, which shows other structural anomalies. CCT is thus clearly partitioned, both functionally and evolutionary, into a substrate-binding side that is opposite to the ATP-hydrolyzing side.


  • Organizational Affiliation

    Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT ALPHAA,
I [auth a]
556Bos taurusMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT BETAB,
J [auth b]
535Bos taurusMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT DELTAC [auth D],
K [auth d]
542Bos taurusMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT EPSILOND [auth E],
L [auth e]
541Bos taurusMutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT GAMMAE [auth G],
M [auth g]
545Bos taurusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT ETAF [auth H],
N [auth h]
543Bos taurusMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT THETAG [auth Q],
O [auth q]
548Bos taurusMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-COMPLEX PROTEIN 1 SUBUNIT ZETAH [auth Z],
P [auth z]
531Bos taurusMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.50 Å
  • R-Value Free: 0.399 
  • R-Value Work: 0.340 
  • R-Value Observed: 0.340 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 272.7α = 90
b = 313.5β = 90
c = 158.3γ = 90
Software Package:
Software NamePurpose
CNSrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-03-20
    Type: Initial release
  • Version 1.1: 2013-04-03
    Changes: Database references
  • Version 1.2: 2013-04-17
    Changes: Database references
  • Version 1.3: 2013-06-05
    Changes: Other, Structure summary
  • Version 1.4: 2019-11-06
    Changes: Data collection, Database references, Other
  • Version 1.5: 2024-10-23
    Changes: Data collection, Database references, Structure summary