3QFG | pdb_00003qfg

Structure of a putative lipoprotein from Staphylococcus aureus subsp. aureus NCTC 8325

PDB DOI: https://doi.org/10.2210/pdb3QFG/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2011-01-21 Released: 2011-02-02
Deposition Author(s): Filippova, E.V., Halavaty, A., Shuvalova, L., Minasov, G., Dubrovska, I., Winsor, J., Kiryukhina, O., Papazisi, L., Bagnoli, F., Falugi, F., Bottomley, M., Grandi, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free:
0.276 (Depositor), 0.271 (DCC)
R-Value Work:
0.233 (Depositor), 0.230 (DCC)
R-Value Observed:
0.235 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structure of a putative lipoprotein from Staphylococcus aureus subsp. aureus NCTC 8325

Filippova, E.V., Halavaty, A., Shuvalova, L., Minasov, G., Dubrovska, I., Winsor, J., Kiryukhina, O., Papazisi, L., Bagnoli, F., Falugi, F., Bottomley, M., Grandi, G., Anderson, W.F.

To be published.

Macromolecule Content

Total Structure Weight: 57.93 kDa
Atom Count: 2,380
Modeled Residue Count: 288
Deposited Residue Count: 484
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	242	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_00808
UniProt
Find proteins for Q2G019 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2G019 Go to UniProtKB: Q2G019
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2G019
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free: 0.276 (Depositor), 0.271 (DCC)
R-Value Work: 0.233 (Depositor), 0.230 (DCC)
R-Value Observed: 0.235 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.346	α = 90
b = 60.739	β = 90
c = 114.385	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-02-02

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2011-02-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-08
Changes: Refinement description
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary