☰ Navigation Tabs
Structure of a putative lipoprotein from Staphylococcus aureus subsp. aureus NCTC 8325
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M SPG buffer, 25% w/v PEG 1500, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.346 α = 90 b = 60.739 β = 90 c = 114.385 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRROR 2010-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.08 57.17 100 0.098 31.5 7.7 12868 12868 -3 73.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.08 3.15 100 0.539 4.2 7.8 608
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.08 57.17 6715 6715 336 99.82 0.23482 0.23279 0.23 0.27594 0.2709 RANDOM 81.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 -2.63 1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.06 r_dihedral_angle_3_deg 21.78 r_dihedral_angle_4_deg 13.237 r_dihedral_angle_1_deg 8.155 r_scangle_it 3.099 r_angle_refined_deg 1.873 r_scbond_it 1.834 r_mcangle_it 1.305 r_angle_other_deg 1.048 r_mcbond_it 0.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.06 r_dihedral_angle_3_deg 21.78 r_dihedral_angle_4_deg 13.237 r_dihedral_angle_1_deg 8.155 r_scangle_it 3.099 r_angle_refined_deg 1.873 r_scbond_it 1.834 r_mcangle_it 1.305 r_angle_other_deg 1.048 r_mcbond_it 0.646 r_mcbond_other 0.116 r_chiral_restr 0.091 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2374 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling