3PV0

Crystal Structure of a pre-translocation state MBP-Maltose transporter complex without nucleotide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.233 

Starting Model: experimental
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Literature

Crystal structure of the maltose transporter in a pretranslocation intermediate state.

Oldham, M.L.Chen, J.

(2011) Science 332: 1202-1205

  • DOI: https://doi.org/10.1126/science.1200767
  • Primary Citation of Related Structures:  
    3PUY, 3PUZ, 3PV0

  • PubMed Abstract: 

    Adenosine triphosphate (ATP)-binding cassette (ABC) transporters convert chemical energy from ATP hydrolysis to mechanical work for substrate translocation. They function by alternating between two states, exposing the substrate-binding site to either side of the membrane. A key question that remains to be addressed is how substrates initiate the transport cycle. Using x-ray crystallography, we have captured the maltose transporter in an intermediate step between the inward- and outward-facing states. We show that interactions with substrate-loaded maltose-binding protein in the periplasm induce a partial closure of the MalK dimer in the cytoplasm. ATP binding to this conformation then promotes progression to the outward-facing state. These results, interpreted in light of biochemical and functional studies, provide a structural basis to understand allosteric communication in ABC transporters.


  • Organizational Affiliation

    Department of Biological Sciences, Purdue University, Howard Hughes Medical Institute, West Lafayette, IN 47907, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Maltose transporter subunit; periplasmic-binding component of ABC superfamilyA [auth E]370Escherichia coli K-12Mutation(s): 2 
Gene Names: ECDH10B_4223malE
Membrane Entity: Yes 
UniProt
Find proteins for P0AEX9 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0AEX9
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UniProt GroupP0AEX9
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Maltose transporter subunit; membrane component of ABC superfamilyB [auth F]514Escherichia coli K-12Mutation(s): 0 
Gene Names: ECDH10B_4222malF
Membrane Entity: Yes 
UniProt
Find proteins for P02916 (Escherichia coli (strain K12))
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UniProt GroupP02916
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Maltose transporter subunit; membrane component of ABC superfamilyC [auth G]296Escherichia coli K-12Mutation(s): 0 
Gene Names: ECDH10B_4221malG
Membrane Entity: Yes 
UniProt
Find proteins for P68183 (Escherichia coli (strain K12))
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UniProt GroupP68183
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory proteinD [auth A],
E [auth B]
381Escherichia coli K-12Mutation(s): 0 
Gene Names: ECDH10B_4224malK
Membrane Entity: Yes 
UniProt
Find proteins for P68187 (Escherichia coli (strain K12))
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UniProt GroupP68187
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  • Reference Sequence
Oligosaccharides

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Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranoseF [auth C],
G [auth D]
2N/A
Glycosylation Resources
GlyTouCan:  G07411ON
GlyCosmos:  G07411ON
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PGV
Query on PGV

Download Ideal Coordinates CCD File 
H [auth F](1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
C40 H77 O10 P
ADYWCMPUNIVOEA-GPJPVTGXSA-N
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.233 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.543α = 90.48
b = 92.63β = 102.13
c = 119.132γ = 104.21
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-05-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary
  • Version 2.1: 2023-09-06
    Changes: Data collection, Database references, Refinement description, Structure summary