3L1I

Crystal structure of EstE5, was soaked by CuSO4

PDB DOI: https://doi.org/10.2210/pdb3L1I/pdb

Classification: HYDROLASE
Organism(s): uncultured bacterium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-12-11 Released: 2010-01-19
Deposition Author(s): Nam, K.H., Hwang, K.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.250
R-Value Work: 0.185
R-Value Observed: 0.192

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structural insights into the noninvasive inhibition of HSL-homolog EstE5 by organic solvents and metal ions

Nam, K.H., Hwang, K.Y.

To be published.

Macromolecule Content

Total Structure Weight: 34.65 kDa
Atom Count: 2,306
Modelled Residue Count: 294
Deposited Residue Count: 322
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Esterase/lipase	A	322	uncultured bacterium	Mutation(s): 0 EC: 3.1.1
UniProt
Find proteins for Q0GMU2 (uncultured bacterium) Explore Q0GMU2 Go to UniProtKB: Q0GMU2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q0GMU2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.250
R-Value Work: 0.185
R-Value Observed: 0.192
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.132	α = 90
b = 61.132	β = 90
c = 150.691	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-01-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-01-19
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.