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Crystal structure of EstE5, was soaked by CuSO4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FAK PDB ENTRY 3FAK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.1M Tris-HCl pH 7.5, 2.2M ammonium sulfate, 0.2M lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 2.03 39.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.132 α = 90 b = 61.132 β = 90 c = 150.691 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 1.23 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 89.7 13715 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 49.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FAK 2.2 43.23 13715 13697 1379 89.98 0.192 0.192 0.185 0.1838 0.25 0.2457 RANDOM 25.048
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.008 r_dihedral_angle_4_deg 18.31 r_dihedral_angle_3_deg 18.014 r_dihedral_angle_1_deg 6.232 r_scangle_it 3.941 r_scbond_it 2.471 r_angle_refined_deg 1.716 r_mcangle_it 1.414 r_mcbond_it 0.781 r_chiral_restr 0.115
Show All KeysRMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.008 r_dihedral_angle_4_deg 18.31 r_dihedral_angle_3_deg 18.014 r_dihedral_angle_1_deg 6.232 r_scangle_it 3.941 r_scbond_it 2.471 r_angle_refined_deg 1.716 r_mcangle_it 1.414 r_mcbond_it 0.781 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Hide All KeysNon-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2222 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction