3BHW | pdb_00003bhw

Crystal structure of an uncharacterized protein from Magnetospirillum magneticum

PDB DOI: https://doi.org/10.2210/pdb3BHW/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Paramagnetospirillum magneticum AMB-1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-11-29 Released: 2007-12-11
Deposition Author(s): Bonanno, J.B., Dickey, M., Bain, K.T., Lau, C., Romero, R., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.281 (Depositor), 0.287 (DCC)
R-Value Work:
0.239 (Depositor)
R-Value Observed:
0.241 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3BHW

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of an uncharacterized protein from Magnetospirillum magneticum.

Bonanno, J.B., Dickey, M., Bain, K.T., Lau, C., Romero, R., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 48.42 kDa
Atom Count: 3,390
Modeled Residue Count: 372
Deposited Residue Count: 418
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	209	Paramagnetospirillum magneticum AMB-1	Mutation(s): 0 Gene Names: amb2038
UniProt
Find proteins for Q2W5N3 (Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1)) Explore Q2W5N3 Go to UniProtKB: Q2W5N3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2W5N3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.281 (Depositor), 0.287 (DCC)
R-Value Work: 0.239 (Depositor)
R-Value Observed: 0.241 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.142	α = 86
b = 43.627	β = 85.89
c = 47.41	γ = 85.58

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
SHELXCD	phasing
SHELXE	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-12-11

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2007-12-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2018-11-14
Changes: Data collection, Structure summary
Version 1.4: 2021-02-03
Changes: Database references, Structure summary
Version 1.5: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.