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Crystal structure of an uncharacterized protein from Magnetospirillum magneticum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 294 100mM Tris-HCl pH 8.0, 25% PEG 3350, 200mM Magnesium chloride, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.83 32.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.142 α = 86 b = 43.627 β = 85.89 c = 47.41 γ = 85.58
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 16.431 93.6 0.107 0.107 11.8 3.9 51480 51480 14.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 91.8 0.444 0.444 2.3 3.8 7426
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 15 51469 51469 2559 93.69 0.241 0.239 0.281 0.2875 RANDOM 23.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 0.07 -0.66 0.06 1.52 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.562 r_dihedral_angle_4_deg 17.766 r_dihedral_angle_3_deg 16.497 r_dihedral_angle_1_deg 5.633 r_scangle_it 3.636 r_scbond_it 2.471 r_angle_refined_deg 1.523 r_mcangle_it 1.522 r_mcbond_it 1.047 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.562 r_dihedral_angle_4_deg 17.766 r_dihedral_angle_3_deg 16.497 r_dihedral_angle_1_deg 5.633 r_scangle_it 3.636 r_scbond_it 2.471 r_angle_refined_deg 1.523 r_mcangle_it 1.522 r_mcbond_it 1.047 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.293 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.182 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3027 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building